PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922692.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 240aa MW: 26762.8 Da PI: 9.2087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922692.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	64.9	1.9e-20	41	87	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca++C+++pyfp ++p+kfa vhk+FGasnv+k+l XP_010922692.1 41 PCAACKLLRRRCAQECPFSPYFPPHEPQKFASVHKVFGASNVSKMLL 87 7********************************************85 PP
2	DUF260	55.3	1.9e-17	123	178	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + +++pe +r da++slvyeA++r+rdPvyG++g +++lqqq++ l++el+++++e XP_010922692.1 123 YNQEVPEAQRADAANSLVYEANMRLRDPVYGCMGAVSDLQQQVQALEVELQVVRAE 178 56899**********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.863	40	179	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-19	41	86	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-15	125	176	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSTERERFDE VGKKIKRETD VTTDRMGRRL GPVGTLNTIT PCAACKLLRR RCAQECPFSP 60 YFPPHEPQKF ASVHKVFGAS NVSKMLLVYY FHPPQNLPSF IIIFSILNHI RWSSRDAHIF 120 FTYNQEVPEA QRADAANSLV YEANMRLRDP VYGCMGAVSD LQQQVQALEV ELQVVRAEIL 180 KHKSRQASVR VLPTSHAALL AHSVDVPVAA PPPIPTPPPR PASSASSSSI YTTPPFDLLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-35	40	182	10	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-35	40	182	10	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922693.1	1e-119	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	7e-68	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2H3ZAG5	1e-103	A0A2H3ZAG5_PHODC; LOB domain-containing protein 15-like
STRING	XP_008810564.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-67	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]