PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922693.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 202aa MW: 22097.4 Da PI: 9.0174

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922693.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.8	3.3e-42	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyfp ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g +++lqqq++ l++el+ XP_010922693.1 41 PCAACKLLRRRCAQECPFSPYFPPHEPQKFASVHKVFGASNVSKMLLEVPEAQRADAANSLVYEANMRLRDPVYGCMGAVSDLQQQVQALEVELQ 135 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010922693.1 136 VVRAE 140 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.03	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-42	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSTERERFDE VGKKIKRETD VTTDRMGRRL GPVGTLNTIT PCAACKLLRR RCAQECPFSP 60 YFPPHEPQKF ASVHKVFGAS NVSKMLLEVP EAQRADAANS LVYEANMRLR DPVYGCMGAV 120 SDLQQQVQAL EVELQVVRAE ILKHKSRQAS VRVLPTSHAA LLAHSVDVPV AAPPPIPTPP 180 PRPASSASSS SIYTTPPFDL LG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-43	41	144	11	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-43	41	144	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922693.1	1e-147	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	2e-76	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2H3ZAG5	1e-111	A0A2H3ZAG5_PHODC; LOB domain-containing protein 15-like
STRING	XP_008810564.1	1e-112	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-75	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]