PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922842.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 761aa    MW: 81299.6 Da    PI: 6.1519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922842.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4111.1e-1253937482374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav++++le+a++lL ++sel++p g++ qR+aayf eA++ar+++s+ +ly+ lp+ + +    ++ ++a+++f+ +sP++kfsh+
  XP_010922842.1 393 LTLLLQCAEAVAADNLEEANRLLLEISELSTPFGTSAQRVAAYFSEAMSARIVSSCLGLYAPLPSAPHR----IRLASAFQVFNGISPFVKFSHF 483
                     579*********************************************************999999997....9999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+gs    s e+le+tg+rL++fA++lg+pfef + +a+++ +l++
  XP_010922842.1 484 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGS----SMEALEATGKRLSDFAQTLGLPFEFCP-LAEKVGNLDP 573
                     *****************************************************....***************************.59******** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++L v+++EalaV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++  ++sFl+rf+ea++yysalfdsl a+++++s+er+ vE
  XP_010922842.1 574 DRLGVNRREALAVHWLH--HSLYDVTGSDTN----TLWLLQRLAPKVVTIVEQDLSQ-AGSFLARFVEAIHYYSALFDSLGASYGEDSQERHIVE 661
                     ****************9..999999999999....********************98.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r+ + + +++Wre+l+++GF+ v+l  +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  XP_010922842.1 662 QQLLSREIRNVLAVGGPARTGDVK-FGNWREKLSQSGFRGVSLAGNAAAQATLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 748
                     ******************999987.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.253366728IPR005202Transcription factor GRAS
PfamPF035143.8E-123393748IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MASSSCLILP HSSSSSSSSS SHETPLPIPS TISTLPLLPH FHQEEDLLFY LHLQQQQHLL  60
DLHHQQKFDK MVRKRPASEL DLPPDSSSYP NPARLPRRAN LPSSSAATAA AASAAVPAAF  120
IGDLQGHSPL MFDPSPAPNP PPILLSGAGP NPAPAALLQS LPPQLPAPPA VCGFSGLPLF  180
PSDMERGGGG GAGVDVLQGM SSSPIGGVSE EGTVGGAVTA TAWIDGIIRD LISSATAEVS  240
IPQLIHNVRE IIQPCNPNLA AVLEYRLRSL TSDSPALPAH SEKRRRPAPA LPELPPPPKR  300
VDPSPSFPSS AAGASSQQLP SWEEPNPNPN PNPSYPRLPN TQPQQPQPQR SSASTSSDDA  360
TAAAAAAAAA AAAKEXKEEI RQQKRDEEGL HLLTLLLQCA EAVAADNLEE ANRLLLEISE  420
LSTPFGTSAQ RVAAYFSEAM SARIVSSCLG LYAPLPSAPH RIRLASAFQV FNGISPFVKF  480
SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGSSMEA  540
LEATGKRLSD FAQTLGLPFE FCPLAEKVGN LDPDRLGVNR REALAVHWLH HSLYDVTGSD  600
TNTLWLLQRL APKVVTIVEQ DLSQAGSFLA RFVEAIHYYS ALFDSLGASY GEDSQERHIV  660
EQQLLSREIR NVLAVGGPAR TGDVKFGNWR EKLSQSGFRG VSLAGNAAAQ ATLLLGMFPS  720
DGYTLIEENG ALKLGWKDLC LLTASAWRPP SATTTPLCTS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.03777513381Protein SCARECROW
5b3h_D0.03777513381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922842.10.0LOW QUALITY PROTEIN: protein SCARECROW 2-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2H3YWR60.0A0A2H3YWR6_PHODC; protein SCARECROW 2-like
STRINGXP_008804655.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein