PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922873.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 361aa MW: 40562.7 Da PI: 7.0996

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922873.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	15	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL +kv + ++++ +++ evd++k+ePwdLp+k+k +ekewyfF+++ kky+tg r nrat+sgyWkatgkdke+++ XP_010922873.1 15 LPPGFRFHPTDEEIITYYLSEKVVNPSFTA-RAMGEVDLNKCEPWDLPSKAKMGEKEWYFFCQKGKKYPTGVRINRATESGYWKATGKDKEIYRG 108 79***********************999.89***********99999************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfykgrapkgekt+Wvmhe+rle XP_010922873.1 109 KGILVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 142 *****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.72	15	166	IPR003441	NAC domain
Pfam	PF02365	9.0E-28	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGEVPVLAEE ECMDLPPGFR FHPTDEEIIT YYLSEKVVNP SFTARAMGEV DLNKCEPWDL 60 PSKAKMGEKE WYFFCQKGKK YPTGVRINRA TESGYWKATG KDKEIYRGKG ILVGMKKTLV 120 FYKGRAPKGE KTNWVMHEFR LEGRTQFYNH HRTPKDGWVV CRVFHKSTGI KRSPISELAR 180 MNSSGDDTME TLMDPSYFNS DNTPSSSFID GGDGGSTVRG ISMTSMPSNF STMLGLEDPQ 240 YKSPMANIFP SINNQERTSM LFQQIPAQNP YFLLPGSANL SYLQQEQAIA KALSNGLKGT 300 CKLEQFSNSM ASQDTGLSND RNTESSSAIS KHEMSSYRSY NELDGGFAAG PVLDLDNLWK 360 Y

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGEVPVLAEE ECMDLPPGFR FHPTDEEIIT YYLSEKVVNP SFTARAMGEV DLNKCEPWDL  60
PSKAKMGEKE WYFFCQKGKK YPTGVRINRA TESGYWKATG KDKEIYRGKG ILVGMKKTLV  120
FYKGRAPKGE KTNWVMHEFR LEGRTQFYNH HRTPKDGWVV CRVFHKSTGI KRSPISELAR  180
MNSSGDDTME TLMDPSYFNS DNTPSSSFID GGDGGSTVRG ISMTSMPSNF STMLGLEDPQ  240
YKSPMANIFP SINNQERTSM LFQQIPAQNP YFLLPGSANL SYLQQEQAIA KALSNGLKGT  300
CKLEQFSNSM ASQDTGLSND RNTESSSAIS KHEMSSYRSY NELDGGFAAG PVLDLDNLWK  360
Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	13	172	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	13	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	13	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	13	172	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	13	172	18	174	NAC domain-containing protein 19
3swm_B	2e-51	13	172	18	174	NAC domain-containing protein 19
3swm_C	2e-51	13	172	18	174	NAC domain-containing protein 19
3swm_D	2e-51	13	172	18	174	NAC domain-containing protein 19
3swp_A	2e-51	13	172	18	174	NAC domain-containing protein 19
3swp_B	2e-51	13	172	18	174	NAC domain-containing protein 19
3swp_C	2e-51	13	172	18	174	NAC domain-containing protein 19
3swp_D	2e-51	13	172	18	174	NAC domain-containing protein 19
4dul_A	2e-51	13	172	15	171	NAC domain-containing protein 19
4dul_B	2e-51	13	172	15	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922873.1	0.0	NAC domain-containing protein 100
TrEMBL	A0A2H3Y2Q5	0.0	A0A2H3Y2Q5_PHODC; NAC domain-containing protein 100-like
STRING	XP_008792523.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-99	NAC domain containing protein 100