PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922997.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 184aa    MW: 20409.4 Da    PI: 10.3735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922997.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-103676954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++l+P        Kl+ +++Le+A++Y+k L
  XP_010922997.1 36 ARLRRHRISDRFRILKSLVPGG-----SKLDTVSMLEEAIHYVKFL 76
                    699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3452776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-133285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-103380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-133380No hitNo description
SMARTSM003536.5E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-73776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEGEPSSFVQ HLKERRRRGR RGSGVKLSTD PQSVAARLRR HRISDRFRIL KSLVPGGSKL  60
DTVSMLEEAI HYVKFLKTQI LLHHAALMLP PGDIPLISFL STISSTPTVN DTPTLGSGGR  120
VFTPSCAFSS SSSSYHQLPP QQMLGHSMPP STPPLPPFPC SSFQGEEEEM LRPVSFNNQT  180
FWLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922997.11e-132transcription factor LAX PANICLE 1
TrEMBLA0A2H3ZCC61e-54A0A2H3ZCC6_PHODC; transcription factor LAX PANICLE 1
STRINGXP_008811690.12e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-27APRATAXIN-like