PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923106.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WOX
Protein Properties Length: 178aa    MW: 20370.9 Da    PI: 9.6085
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923106.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.1e-201576157
                    TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++ R+++t+eq+++L +lF++  r+ps+++++ ++++l    +++ ++V++WFqN++a+e++
  XP_010923106.1 15 KCGRWNPTAEQVKVLTDLFRSgLRTPSTDQIQTISSHLssfgKIESKNVFYWFQNHKARERH 76
                    568*****************99**************************************95 PP
2Wus_type_Homeobox110.78.1e-361577264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq i+++L+++Gkie+kNVfyWFQN+kaRer++
     XP_010923106.1 15 KCGRWNPTAEQVKVLTDLFRSGLRTPSTDQIQTISSHLSSFGKIESKNVFYWFQNHKARERHH 77
                       578**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.0091277IPR001356Homeobox domain
SMARTSM003897.0E-41481IPR001356Homeobox domain
SuperFamilySSF466892.18E-111580IPR009057Homeodomain-like
PfamPF000463.1E-171676IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-71875IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDEGDRFGTA RVGAKCGRWN PTAEQVKVLT DLFRSGLRTP STDQIQTISS HLSSFGKIES  60
KNVFYWFQNH KARERHHKKR RRGGPGPGAG GGEDHLLLLP DKRGARTRSL PSNDDSRKSE  120
QEVMWEERQR EIETLELFPL KSYDLAAEKW RSMRNECKEA GFLEAGMDPP LDLSLRFL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923106.11e-130WUSCHEL-related homeobox 9
SwissprotQ8W0F13e-63WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLA0A2H3XLH42e-93A0A2H3XLH4_PHODC; WUSCHEL-related homeobox 9-like
STRINGXP_008785588.14e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94113643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.13e-37WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  3. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  4. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  5. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]