PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923319.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 245aa    MW: 26656.7 Da    PI: 6.2937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923319.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.9e-11127174455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  XP_010923319.1 127 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 174
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-18121191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-11121178No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18123192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8127174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPSSLVSQA PLPEVWQFPM VGVPPGGPRV GRMKPGPEAS AVGNRDGSLD ESTVTEQSGG  60
NWGRRKRRDS ASEDESSKLV STSSGNDLAE ASSGICNKTV DQNPPPPEPP KQDYIHVRAR  120
RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA SVLDEIINYI QALQRQVEFL  180
SMKLEAVNSR MNTGIEGFPA KDFGAQTYDT TSSLAFNTQP AREYGQGSAT EWLHMQVGGA  240
FERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923316.11e-171transcription factor BHLH089
SwissprotQ69WS31e-85BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2H3Z5K21e-145A0A2H3Z5K2_PHODC; transcription factor BHLH089-like isoform X2
STRINGXP_008808720.11e-145(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-75BIG PETAL P