PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923489.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bZIP
Protein Properties Length: 456aa    MW: 48832.2 Da    PI: 4.8407
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923489.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.7e-15245299357
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     + kr rr+ +NRe+ArrsR+RK+a + eLe  v +L  eN++L k+   +++++ 
  XP_010923489.1 245 DAKRVRRMLSNRESARRSRRRKQAHLSELEAQVSQLRVENSSLLKRFTDINQKYN 299
                     689*****************************************99999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.8E-12242298No hitNo description
SMARTSM003382.2E-19243307IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.484245299IPR004827Basic-leucine zipper domain
PfamPF001701.4E-13246298IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.09E-11247297No hitNo description
CDDcd147023.74E-6248299No hitNo description
PROSITE patternPS000360250265IPR004827Basic-leucine zipper domain
PfamPF124986.7E-47314431IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MERVFSVDEM SDSFWAAAAG LPSPAAGGRP RGLMNRSPSE WYFEKFLEVA EEEAAIPRTT  60
PPPPANPNLD PDYNRNPPPA SAVASNSSGG GRKDGGRGGE DELVEIKEPA VVAAAAPPQG  120
PPSDPPADVD PKEYVALLKQ RLDLYCAAVA MCRGSGVNSP DSSSLDSKSL SLDASQLGSQ  180
GPVPGNGSKM QQKAGSGPTG GEAPPVMQNL GVQGRPATSG SSREQSDDEE FEGEAETTEN  240
MDPADAKRVR RMLSNRESAR RSRRRKQAHL SELEAQVSQL RVENSSLLKR FTDINQKYND  300
AAVDNRVLKA DVETLRAKVK MAEETVKRVT GVNLLYPNIP DISTIGMPFS GSPSDATADT  360
SVPIQDNPNH FFQPPSHDQR INTCLPEIAP APPVEDVMHG AVVGGKMGRT ASMQRVASLE  420
HLQKRMYGGP SSCEPVQWDA AAWDPETSVS NKQNQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259266RRSRRRKQ
2261266SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786076.10.0bZIP transcription factor RISBZ2-like isoform X1
SwissprotQ7X9A81e-107RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A2H3XMQ90.0A0A2H3XMQ9_PHODC; bZIP transcription factor RISBZ2-like isoform X1
STRINGXP_008786076.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.26e-54bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]