PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923565.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 462aa    MW: 50919.3 Da    PI: 9.1158
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923565.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32184240259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkg e+prsYY+Ct+++Cpvkk+ve+s  d++v++i+Y+g+Hnh+
  XP_010923565.1 184 DDGYNWRKYGQKQVKGGEYPRSYYKCTYPNCPVKKRVEQSL-DGQVTHIIYKGQHNHP 240
                     8****************************************.***************7 PP
2WRKY105.52.8e-33343401159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYYrCt  gC v+k++ers++dpk+v++tYeg+Hnh+
  XP_010923565.1 343 LDDGYRWRKYGQKVVKGNPHPRSYYRCTNVGCIVRKHIERSSTDPKAVITTYEGKHNHD 401
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28176242IPR003657WRKY domain
SuperFamilySSF1182904.71E-26181242IPR003657WRKY domain
SMARTSM007747.6E-36183241IPR003657WRKY domain
PfamPF031066.2E-25184240IPR003657WRKY domain
PROSITE profilePS5081123.548184242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-36328403IPR003657WRKY domain
SuperFamilySSF1182901.57E-29335403IPR003657WRKY domain
PROSITE profilePS5081138.411338403IPR003657WRKY domain
SMARTSM007742.1E-38343402IPR003657WRKY domain
PfamPF031061.8E-25344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTLVSSFFAD DPDSENRSFS QLLAGAIDSP VVAPPSTPAE RGSGGGGEGR GSRQRQRQNW  60
PMFRSPLVAV PPRLCQSSFE SPAGLFLSKT GYFGIRHQQA LAQVTGQAAD SHSYMHDQAE  120
YPSVSAAMST SLTQPAGSLI HTLSLQQMPP LSLATNNTTV KSADGSHSDH KPQHTSLNVD  180
KPADDGYNWR KYGQKQVKGG EYPRSYYKCT YPNCPVKKRV EQSLDGQVTH IIYKGQHNHP  240
LPPQDRHGKE CVSGCDEFPG SFHFPANSRT GTANFSRGRD CSHGTSERLS DASEGEVGDG  300
EPGTDEGGDS TQDLKRRMME STSHRMVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN  360
PHPRSYYRCT NVGCIVRKHI ERSSTDPKAV ITTYEGKHNH DVPAARNSSH ATTNAGASTS  420
SMHPKAHNTT SNSQRFLRRI EFRNNVQRPI ALHPLRKEHN IA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-39184404878Probable WRKY transcription factor 4
2lex_A4e-39184404878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923565.20.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-117WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2H3XAN60.0A0A2H3XAN6_PHODC; probable WRKY transcription factor 3
STRINGXP_008780961.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-111WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]