PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923674.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 241aa    MW: 26405 Da    PI: 6.8669
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923674.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16.1e-33102158158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +++rkpylheSRh hAl+R+RgsgGrF
  XP_010923674.1 102 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IRTRKPYLHESRHLHALKRARGSGGRF 158
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-37100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.375101161IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-28103158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-24104126IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860106126IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-24135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTSSVHSISD GGRPDEQQKQ TQPEVQQQAP ATGNFQPGMA TPVGFMISPG HLEAGHAVAP  60
IAYPFVDPYY GGVFAAYGQT VIHPQMMGMH HAGVPLPAEA VEEPVYVNAK QYHGILRRRQ  120
SRAKAESENK LIRTRKPYLH ESRHLHALKR ARGSGGRFLN SKSQGNQQNS NSKSEEDQEN  180
EVASRDRAQP SNNPASDNLC SKNQQNAAVS DDREKPVNLT DSDKSSLDNE PEATSNLLVQ  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21101164164NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923674.11e-180nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ84JP11e-52NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2H3Y7S21e-140A0A2H3Y7S2_PHODC; nuclear transcription factor Y subunit A-7-like
STRINGXP_008794453.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-47nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]