PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010923675.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YA

Protein Properties

Length: 203aa MW: 22355.7 Da PI: 7.3462

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010923675.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.5	4.5e-33	64	120	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +++rkpylheSRh hAl+R+RgsgGrF XP_010923675.1 64 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IRTRKPYLHESRHLHALKRARGSGGRF 120 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.8E-37	62	123	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.375	63	123	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.2E-28	65	120	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-24	66	88	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	68	88	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.1E-24	97	120	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MATPVGFMIS PGHLEAGHAV APIAYPFVDP YYGGVFAAYG QTVIHPQMMG MHHAGVPLPA 60 EAVEEPVYVN AKQYHGILRR RQSRAKAESE NKLIRTRKPY LHESRHLHAL KRARGSGGRF 120 LNSKSQGNQQ NSNSKSEEDQ ENEVASRDRA QPSNNPASDN LCSKNQQNAA VSDDREKPVN 180 LTDSDKSSLD NEPEATSNLL VQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-22	63	126	1	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923674.1	1e-150	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_010923675.1	1e-150	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	7e-48	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2H3Y7S2	1e-114	A0A2H3Y7S2_PHODC; nuclear transcription factor Y subunit A-7-like
STRING	XP_008794453.1	1e-115	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-47	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]