PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923676.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 150aa    MW: 16390.6 Da    PI: 10.0711
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923676.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.71.4e-16102136136
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                     +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +++rk
  XP_010923676.1 102 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IRTRK 136
                     69***************************9.88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-9100150IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115220.119101150IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-12103137IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860106126IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MTSSVHSISD GGRPDEQQKQ TQPEVQQQAP ATGNFQPGMA TPVGFMISPG HLEAGHAVAP  60
IAYPFVDPYY GGVFAAYGQT VIHPQMMGMH HAGVPLPAEA VEEPVYVNAK QYHGILRRRQ  120
SRAKAESENK LIRTRKLTRV KNPPSHKRAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923674.11e-97nuclear transcription factor Y subunit A-7 isoform X1
TrEMBLA0A2H3Y7S22e-83A0A2H3Y7S2_PHODC; nuclear transcription factor Y subunit A-7-like
STRINGXP_008794453.13e-84(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-31nuclear factor Y, subunit A7