PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010923743.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 782aa MW: 89271.7 Da PI: 6.429

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010923743.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.3	6.2e-24	11	97	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGFsvrk ks rn + +r +vCs+eg+r ++ ++ +++++ +etrtgC a++ +k + gk++v++++ +HnH+la XP_010923743.1 11 EFYVKYAGTVGFSVRKGWWDKSARNV-TRSRVYVCSREGFRPKTLTN--DAQKPWPETRTGCPARMAIKITPGGKYCVSEFVADHNHQLA 97 6*******************7766.99*********99888..999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-21	11	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-27	195	288	IPR018289	MULE transposase domain
Pfam	PF04434	8.5E-5	463	507	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.767	463	510	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-4	485	512	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MVFANEDKAY EFYVKYAGTV GFSVRKGWWD KSARNVTRSR VYVCSREGFR PKTLTNDAQK 60 PWPETRTGCP ARMAIKITPG GKYCVSEFVA DHNHQLAAPL DIQMLRSQRL LAKVQPGGRQ 120 NTSLIPADYR NYLRSERMKD MKNGDAGALL EYLQKMKSKN PSFFYAIQVD EEDQLTNIFW 180 ADAQSMMDYH YFGDVVCFDT AYRTNDYDRP LALFFGVNHH KQITIFGSAL LYDETVESFK 240 WLFETFKTAM CRKQPRTVLT ERCAAVCDAI AAIWPGMMHR LCLWQIHQDA MKNLSHVFEG 300 SENFALDFSR CLYDCEDEEE FVSAWETMLE QYDLKDNEWL QKLYEERDKC ALVYAREIFC 360 ADIANTLRNE NLNSTLKEYL KLETDLLSFF KQYDSLLEEQ RYAEQQADYH ANQGASKLPP 420 LRLLCQAANV YTPAVFEIFR LEFELIMNCI VYSCDEVGTI SQYVVTVKGK TKEHFVRFDS 480 ADGSAMCSCK KFDFDGVQCC HVLKILDLRN IKELPLQYVL KRWRKDAKVG SASENYNCAL 540 DGDSQSSLPK RYSSLCRILY KIAARAAENA EAYSFMESQS DQLLEQVEHI LQARLLEKPS 600 PSTASKGQPH NLDQNESNNG ESPRASGKKK KNGDARRRNQ NGFELNKRQK GRQGPSGDAE 660 ITIRSDEPPA PSDEMLAQPS NPPNPFFAPS QFMQGPYVSG HQFGLSAVQG FHKMTQFSQV 720 QESSATALHQ QPFHGNTELG QNDVQACPAT DMHSLQFVGS NLQLGHQSSD QGHYSIPVWD 780 FL

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MVFANEDKAY EFYVKYAGTV GFSVRKGWWD KSARNVTRSR VYVCSREGFR PKTLTNDAQK  60
PWPETRTGCP ARMAIKITPG GKYCVSEFVA DHNHQLAAPL DIQMLRSQRL LAKVQPGGRQ  120
NTSLIPADYR NYLRSERMKD MKNGDAGALL EYLQKMKSKN PSFFYAIQVD EEDQLTNIFW  180
ADAQSMMDYH YFGDVVCFDT AYRTNDYDRP LALFFGVNHH KQITIFGSAL LYDETVESFK  240
WLFETFKTAM CRKQPRTVLT ERCAAVCDAI AAIWPGMMHR LCLWQIHQDA MKNLSHVFEG  300
SENFALDFSR CLYDCEDEEE FVSAWETMLE QYDLKDNEWL QKLYEERDKC ALVYAREIFC  360
ADIANTLRNE NLNSTLKEYL KLETDLLSFF KQYDSLLEEQ RYAEQQADYH ANQGASKLPP  420
LRLLCQAANV YTPAVFEIFR LEFELIMNCI VYSCDEVGTI SQYVVTVKGK TKEHFVRFDS  480
ADGSAMCSCK KFDFDGVQCC HVLKILDLRN IKELPLQYVL KRWRKDAKVG SASENYNCAL  540
DGDSQSSLPK RYSSLCRILY KIAARAAENA EAYSFMESQS DQLLEQVEHI LQARLLEKPS  600
PSTASKGQPH NLDQNESNNG ESPRASGKKK KNGDARRRNQ NGFELNKRQK GRQGPSGDAE  660
ITIRSDEPPA PSDEMLAQPS NPPNPFFAPS QFMQGPYVSG HQFGLSAVQG FHKMTQFSQV  720
QESSATALHQ QPFHGNTELG QNDVQACPAT DMHSLQFVGS NLQLGHQSSD QGHYSIPVWD  780
FL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923743.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A3Q0I295	0.0	A0A3Q0I295_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008787331.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-119	FAR1-related sequence 5