PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923773.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 919aa    MW: 104559 Da    PI: 7.3164
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923773.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.4e-2295180290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn+YA++ GFsvrk +  ++ ++g+i +r f Cs+eg+r++++++   ++++r+  rt+C a+++ k ++d++w+ +k+  eHnH+l+
  XP_010923773.1  95 FYNRYAHRKGFSVRKGHLGRR-KDGTIRNRVFLCSNEGSRQKHSTH--MTKKPREAVRTNCMARIEYKVSRDNVWVASKIIYEHNHPLV 180
                     9****************9997.8888****************9888..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-2095180IPR004330FAR1 DNA binding domain
PfamPF105512.7E-29304398IPR018289MULE transposase domain
PROSITE profilePS5096610.076573620IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-4581617IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5595622IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MDPPGSSSDN GSLETGEDSQ SDKEKDDAEI DNMSQGPSTG ENVVQKISQN SKEGDSSSVA  60
VKDTNNIDKS KAYGNSQLEP EVGMVFHSED QAYAFYNRYA HRKGFSVRKG HLGRRKDGTI  120
RNRVFLCSNE GSRQKHSTHM TKKPREAVRT NCMARIEYKV SRDNVWVASK IIYEHNHPLV  180
RPHKAHLLRS HRKLLAQRDG MPNVAETGND VDKPAQALEF LVEEACDAET VGFLLKDQST  240
YLHTNRMREL EKGDAQVLLE FLKAKQLEDP SFFYAIQLDD REQVTNFFWA DARSILDFSY  300
FGDVVLFDTT YRTNKGEIPF APFIGINHHK QIVVFGSALL LDETTESFVW LFKTFMVAMS  360
RRQPKTIFTD HFPALSRAVS LTLPETCHRL CLWHILQNSA IHMSHVYSSE PNFQKDFKNC  420
IYEGGSEEDF HTQWVNLVNM YGLAGNAWLD DLYAVREKWA VVYHKNSFCA SMTTAKWSES  480
MKNHFKKNFN RKLPLSKFLE QYQKSLIRFR EKELYEDYKS RQTKPVLLVD MPMLNEAAES  540
YTRLVYNEFE DEIKSQLSCL CEQVGFDGTI DVYKVSVPEK HCYGIVEYNP SNLMVTCSCK  600
KFETTGILCM HALKVLLFRS ILSLPSRYIL KRWTKYANVE VMSDRHRPAA DTDGQEPLTS  660
QYTRVCHKAI TIAVKSAFSE DALQIFENEL EKLMLEVENV LHIAPLSRQT DEEDVTVIDD  720
MQQNAFEGSK KRRGRKGRPK GGGLEQKRNK KTQPTSSSVD IVSQNQQSQN KTKTRQADVL  780
GQAMVNESSN VPSYPLDATP SYCTPIQMQP SGCTSFSQEV VMPAQESFTP SQGVFDHTMA  840
TQAVRNPSIA WCTARGSVGV PMQIMQGQSN NFVSWMVQPR GVPNVSLPPH HLDEPMHSAL  900
PTQHQSLSRK LNFDINKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1729739KKRRGRKGRPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707317.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3Z7080.0A0A2H3Z708_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X3
STRINGXP_008809351.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-136FAR1-related sequence 5