PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924181.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 213aa    MW: 23488.9 Da    PI: 10.7456
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924181.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-2067101135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs C+t+kTplWR+gp+g+k+LCnaCG++yrkk++
  XP_010924181.1  67 CSDCRTSKTPLWRSGPNGPKSLCNACGIRYRKKRR 101
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.1E-1861116IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.1126197IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-1462105No hitNo description
Gene3DG3DSA:3.30.50.105.0E-1765102IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.14E-1466102No hitNo description
PROSITE patternPS0034406792IPR000679Zinc finger, GATA-type
PfamPF003203.0E-1867102IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MISAAVAKAS YPNWGSRCDS RHHGPGATVI DGYDRMLVMK PYARRRRGEE PKEKSAALGP  60
PDSSRVCSDC RTSKTPLWRS GPNGPKSLCN ACGIRYRKKR RKAEINGEEV AEKQQKTKTT  120
TTASITTATS IKGKNENAMA SSEVVGEEEL RRRQKEKQEK MLLLLVERQK QRRRELKAAA  180
MAAARRGFGA GKEEAEAALL LLSLSSSGIF VHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924181.11e-155GATA transcription factor 16
TrEMBLA0A2H3YMB61e-106A0A2H3YMB6_PHODC; GATA transcription factor 16-like
STRINGXP_008800908.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2496835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-19GATA transcription factor 16