PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924354.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 336aa    MW: 37817.1 Da    PI: 8.5613
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924354.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46e-33200257259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+
  XP_010924354.1 200 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPTIVITTYEGQHTHQ 257
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-35184259IPR003657WRKY domain
SuperFamilySSF1182903.4E-29191259IPR003657WRKY domain
PROSITE profilePS5081131.491194259IPR003657WRKY domain
SMARTSM007744.0E-38199258IPR003657WRKY domain
PfamPF031061.0E-25200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSRENRELYH HDHHFLRDRN DLPFHDDLSP FFSQRPGTGA SQELQGFFHL QAASPYMNIT  60
EYLHGSSDYG LLSKGFNTSC SSPEMFGPRD GGLVKRELVV DTSIGTNLNV STGGGDGGTT  120
PLTPNSSVSS SSSEAAGEED SGRCKKDQLK VEEEEKQQLK GSEEGGDKSK KVSKPRKKAE  180
KRQRQPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC SVKKRVERSY  240
QDPTIVITTY EGQHTHQSPA TIRGSTHILA PPPTMPMSFR QDFLMHQMPQ LSASSQQGEA  300
NPSMYLPTLP PLQQPQFPDY GLLQDIVPSF IHNKQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-28189260778Probable WRKY transcription factor 4
2lex_A7e-28189260778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924354.10.0WRKY transcription factor 71
TrEMBLA0A2H3YGU50.0A0A2H3YGU5_PHODC; WRKY transcription factor 28-like
STRINGXP_008798309.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-50WRKY DNA-binding protein 71