PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924406.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 294aa    MW: 32686.6 Da    PI: 8.3622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924406.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.7e-33622021128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksg 81 
                     lp+G++F+Ptd+el+ e+L+ k++ ++      ++++  +i+   +i++++P++Lp  v+ +    +fF++ +k+y+tg+rk+r+       ++ 
  XP_010924406.1  62 LPAGVKFDPTDQELL-EHLEGKARPDSqklhplIDEFIpTIEGEnGICYTHPERLP-GVSRDGLIRHFFHRPSKAYTTGTRKRRKvstdehGRET 154
                     799************.99****998885565443332233665557**********.555555677******************74544443378 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_010924406.1 155 RWHKTGKTRPVVA-GGKLKGYKKILVLYtnYGKQQKPEKTNWVMHQYHL 202
                     8************.9*************65589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3754221IPR003441NAC domain
PROSITE profilePS5100533.60462221IPR003441NAC domain
PfamPF023652.6E-1563202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAWCNSCDDD RMIERSSGSS SALINKKSYA NAIETCPSCG HHIQYEEQAA AAAAAIQDLP  60
GLPAGVKFDP TDQELLEHLE GKARPDSQKL HPLIDEFIPT IEGENGICYT HPERLPGVSR  120
DGLIRHFFHR PSKAYTTGTR KRRKVSTDEH GRETRWHKTG KTRPVVAGGK LKGYKKILVL  180
YTNYGKQQKP EKTNWVMHQY HLGSDEEEKD GELVVSKVFY QTQPRQCGSA TKGAARAQSK  240
DLNSDDNPVL KDASIVDYYN SSLITYNQVG HNRASSPHLI PNFAVHAGGT SFLP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924406.10.0NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2H3YG130.0A0A2H3YG13_PHODC; NAC domain-containing protein 73-like
STRINGXP_008798265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-122NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]