PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924436.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 463aa    MW: 51717.7 Da    PI: 10.3865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924436.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18897198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffkv      l+s+ l +p  f  ++ +  +e + t++l+ +sg +W+v++   k+s++ ++++GWk+Fv ++ ++ gDf+vF++dg   f   v v
  XP_010924436.1  8 FFKVY--FPELSSDHLKIPPAFR-KYiE--HELPGTVSLKGPSGGTWNVEF--VKSSKGLLFANGWKKFVADHSIELGDFLVFRYDGGLHF--SVLV 95
                    55666..34567778******97.5525..458889***************..*******************************9985555..6666 PP

                    E- CS
              B3 97 fr 98
                    ++
  XP_010924436.1 96 LD 97
                    55 PP
2B355.88.3e-18359447498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     v+  s+v  s  + +p +f++eh   ++ sk++tl d++g+ W v++    +s+r  +++GW +F  an+L+  D++vF+l++r+    +v++fr
  XP_010924436.1 359 VMRDSYVYVSFFMNIPYPFVREHL--PKISKKMTLWDPNGKPWAVNY--VSYSSRGGFSAGWGGFSYANNLEKYDVCVFELIKRDHM--KVHIFR 447
                     567789999999***********5..347899***************..6666666699**********************986555..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-252101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-233101IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-20697No hitNo description
PROSITE profilePS5086314.311699IPR003340B3 DNA binding domain
PfamPF023629.2E-16895IPR003340B3 DNA binding domain
SMARTSM010195.8E-15899IPR003340B3 DNA binding domain
PfamPF021781.8261269IPR017956AT hook, DNA-binding motif
PfamPF021785.5282291IPR017956AT hook, DNA-binding motif
Gene3DG3DSA:2.40.330.102.5E-25347447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-26349447IPR015300DNA-binding pseudobarrel domain
CDDcd100176.49E-24354447No hitNo description
SMARTSM010193.7E-15355449IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197356449IPR003340B3 DNA binding domain
PfamPF023621.2E-15359447IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MERSSPHFFK VYFPELSSDH LKIPPAFRKY IEHELPGTVS LKGPSGGTWN VEFVKSSKGL  60
LFANGWKKFV ADHSIELGDF LVFRYDGGLH FSVLVLDATA CEKEAAFLAR PYGGGHIAIV  120
DGIEGGEEGE TMGEHDSKAL VLSPNESFGV GHMRNICSVD CLAMQGPPSK TEKRKKGSPS  180
DEVAAISQDD LDSWKLRKSK SKTPDWSNSM VVARISPPSG ALAVPHKKVH ENTMREKDLH  240
KRKIVSSEHT MAVNKAKTKL QRGRPAKTSA LSVTSTAKSL SKKVGRPSKM SALKQSSQMS  300
ERLKLLPCND VARRGEVVAK VQRMPSLISQ RRPVTKEEIN KALEQAKSFK SKSPFVRVVM  360
RDSYVYVSFF MNIPYPFVRE HLPKISKKMT LWDPNGKPWA VNYVSYSSRG GFSAGWGGFS  420
YANNLEKYDV CVFELIKRDH MKVHIFRVVK EIAPLIRNTK CKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1932644819142B3 domain-containing transcription factor VRN1
4i1k_B5e-1932644819142B3 domain-containing transcription factor VRN1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924436.10.0B3 domain-containing protein Os11g0197600 isoform X1
TrEMBLA0A2H3XRJ40.0A0A2H3XRJ4_PHODC; B3 domain-containing protein Os11g0197600-like isoform X1
STRINGXP_008787667.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-19related to vernalization1 1