PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924451.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 455aa    MW: 50798.7 Da    PI: 10.4205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924451.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18897198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffkv      l+s+ l +p  f  ++ +  +e + t++l+ +sg +W+v++   k+s++ ++++GWk+Fv ++ ++ gDf+vF++dg   f   v v
  XP_010924451.1  8 FFKVY--FPELSSDHLKIPPAFR-KYiE--HELPGTVSLKGPSGGTWNVEF--VKSSKGLLFANGWKKFVADHSIELGDFLVFRYDGGLHF--SVLV 95
                    55666..34567778******97.5525..458889***************..*******************************9985555..6666 PP

                    E- CS
              B3 97 fr 98
                    ++
  XP_010924451.1 96 LD 97
                    55 PP
2B355.88.1e-18351439498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     v+  s+v  s  + +p +f++eh   ++ sk++tl d++g+ W v++    +s+r  +++GW +F  an+L+  D++vF+l++r+    +v++fr
  XP_010924451.1 351 VMRDSYVYVSFFMNIPYPFVREHL--PKISKKMTLWDPNGKPWAVNY--VSYSSRGGFSAGWGGFSYANNLEKYDVCVFELIKRDHM--KVHIFR 439
                     567789999999***********5..347899***************..6666666699**********************986555..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-252101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-233101IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-20697No hitNo description
PROSITE profilePS5086314.311699IPR003340B3 DNA binding domain
SMARTSM010195.8E-15899IPR003340B3 DNA binding domain
PfamPF023628.9E-16895IPR003340B3 DNA binding domain
PfamPF021781.7253261IPR017956AT hook, DNA-binding motif
PfamPF021785.4274283IPR017956AT hook, DNA-binding motif
Gene3DG3DSA:2.40.330.102.4E-25339439IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-26341439IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-24346439No hitNo description
SMARTSM010193.7E-15347441IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197348441IPR003340B3 DNA binding domain
PfamPF023621.2E-15351439IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MERSSPHFFK VYFPELSSDH LKIPPAFRKY IEHELPGTVS LKGPSGGTWN VEFVKSSKGL  60
LFANGWKKFV ADHSIELGDF LVFRYDGGLH FSVLVLDATA CEKEAAFLAR PYGGGHIAIV  120
DGIEGGEEGE TMGEHDSKAL VLSPNESFGV GHMRNICSVD CLAMQGPPSK TEKRKKGSPS  180
DEVAAISQDD LDSWKLRKSK SKTPARISPP SGALAVPHKK VHENTMREKD LHKRKIVSSE  240
HTMAVNKAKT KLQRGRPAKT SALSVTSTAK SLSKKVGRPS KMSALKQSSQ MSERLKLLPC  300
NDVARRGEVV AKVQRMPSLI SQRRPVTKEE INKALEQAKS FKSKSPFVRV VMRDSYVYVS  360
FFMNIPYPFV REHLPKISKK MTLWDPNGKP WAVNYVSYSS RGGFSAGWGG FSYANNLEKY  420
DVCVFELIKR DHMKVHIFRV VKEIAPLIRN TKCKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1931844019142B3 domain-containing transcription factor VRN1
4i1k_B7e-1931844019142B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924451.10.0B3 domain-containing protein Os11g0197600 isoform X3
SwissprotQ2R9D25e-57Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A2H3XRJ40.0A0A2H3XRJ4_PHODC; B3 domain-containing protein Os11g0197600-like isoform X1
STRINGXP_008787667.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-19related to vernalization1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]