PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924545.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 253aa    MW: 28790.9 Da    PI: 8.0818
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924545.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.62.1e-2339117371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     +++Lr++++    +++k+e+ g++t+neva+e+++e             ++kn+rRR+YD++NVL+a++ i k +k+eirw g
  XP_010924545.1  39 GWGLRQFSML---VCKKVEAkGRTTYNEVADEIIAElaplqtsansfvfEEKNIRRRVYDAFNVLMAIDAIVK-DKKEIRWVG 117
                     589*******...******99****************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.0E-8710251IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.2E-3533120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-2637117IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-1740118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.3E-1941117IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.2E-32124253IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.59E-34125241No hitNo description
PfamPF087812.7E-31125244IPR014889Transcription factor DP, C-terminal
CDDcd144583.39E-31125225IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTPPSENILA LNNLYHEEGE KCQVSDDAEV KKKTQRNIGW GLRQFSMLVC KKVEAKGRTT  60
YNEVADEIIA ELAPLQTSAN SFVFEEKNIR RRVYDAFNVL MAIDAIVKDK KEIRWVGWSC  120
TKTAELKGLK EVRMNLMNSI QRKARFLKDL EDQFVDHQNL MLRNQRLHKS ANVSSQGVAL  180
PFLLVRTNPK ATVEIEISED QHFVKFDFNG TPFTVHDAAA ILKEMRFSQA LETENATRSS  240
LDGSNLITDP SGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2532117388PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924545.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY23e-72DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2H3Y4231e-172A0A2H3Y423_PHODC; transcription factor-like protein DPB isoform X2
STRINGXP_008793105.11e-171(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-74Transcription factor DP