PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924658.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 351aa    MW: 37063.1 Da    PI: 5.8438
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924658.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.9e-18245279135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010924658.1 245 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 279
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-7817333IPR016679Transcription factor, GATA, plant
SMARTSM004015.1E-17239289IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.295239275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14241276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.8E-15242303No hitNo description
CDDcd002021.41E-14244291No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15245279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAPEYLHGG YYKAGTPQFA PEKKVGGGAG EHFVVEDLLD FSNEEDEAGV AAGGDDAGFD  60
ATAGNSTDSS TVTAVDSCSN SFSGSDPHFS GDLVCRSFAD ASLSGDLCEP YDELAELEWL  120
SNFVEESFSS EDLQKLQLIS GIKSSSSSSE NRAEIAPTVG GGAAQPALFR PEAPVPGKAR  180
SKRSRAAPCS WSSRLLVLSP TTTASSPESE LLVPAGSSCG KKAAVKKKDQ SSRPAVAPAA  240
DGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLSKHSNSH  300
RKVLELRRQK ELQQQQLLQA GSSAVYDGGA AAAGDDFLIH HHLGPDFRQL I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924658.10.0GATA transcription factor 12
SwissprotP697814e-88GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2H3Z9Y90.0A0A2H3Z9Y9_PHODC; GATA transcription factor
STRINGXP_008810653.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-73GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]