PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924715.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 179aa    MW: 19703.7 Da    PI: 11.619
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924715.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.5e-204276135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+t++TplWR+gp+g+++LCnaCG++yrk+++
  XP_010924715.1 42 CAECRTSQTPLWRSGPNGPRSLCNACGIRYRKRRK 76
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7163672IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-153695IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-133678No hitNo description
Gene3DG3DSA:3.30.50.101.2E-164076IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.30E-134175No hitNo description
PROSITE patternPS0034404267IPR000679Zinc finger, GATA-type
PfamPF003201.2E-174276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEVFKRYARR RRRVKEPKKN SASAVAVVVE AAMGSLDPSR VCAECRTSQT PLWRSGPNGP  60
RSLCNACGIR YRKRRKAEIN GEDKHRKTSA STATRTIKGK NGSMIASLEV VGEELRRRQK  120
EKQERMLLRL LERQKQRSRG LTAAATAAAG RGAGKEEAEA ALLLLSLSSS GIFVHPSTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924715.11e-126GATA transcription factor 23
TrEMBLA0A2H3XRG12e-66A0A2H3XRG1_PHODC; GATA transcription factor 16-like
STRINGXP_008787687.14e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2496835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-17GATA transcription factor 23