PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924840.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 360aa    MW: 39733.3 Da    PI: 5.9286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924840.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.5e-28124184158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+e+p v+++tY+g+H++
  XP_010924840.1 124 LDDGYSWRKYGQKDILGAKYPRGYYRCTHRntqGCLATKQVQRSDENPLVFDVTYHGTHTC 184
                     59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.837119182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-27121185IPR003657WRKY domain
SuperFamilySSF1182902.22E-25123184IPR003657WRKY domain
SMARTSM007741.4E-41124186IPR003657WRKY domain
PfamPF031068.1E-27125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEHRAGGGGS LLVSELIQVQ ELVRQLEAHL DQPSPIEFCK SLARQILPSI ERSISIAKMS  60
DSEGQQRLAG TESPRSATES PCSENSNQAF KDCDRKEMSK KRKTLPRRTS QVTVCPGAGV  120
EGPLDDGYSW RKYGQKDILG AKYPRGYYRC THRNTQGCLA TKQVQRSDEN PLVFDVTYHG  180
THTCLQRSPS VPKAVVSPYQ EPKQNNPYFQ EHALQQQQQG DNNLLQTFQR GLKVETQGLD  240
SDTRDLSSLS FSFPPTPVGG IKAENHIFSS PSKLDNGFMG SFSPSFVSPA TSESNYFSMS  300
PCCMGNYGGG FNLPTAESEL TEIISAATSA TDSPLMGMDF LLEPMEFDPK FQFDASSFYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19124184868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924840.10.0probable WRKY transcription factor 53
TrEMBLA0A2H3Y0320.0A0A2H3Y032_PHODC; probable WRKY transcription factor 53
STRINGXP_008791438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-42WRKY family protein