PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924919.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 251aa    MW: 27999.3 Da    PI: 8.71
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924919.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.9e-1995148356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++keq + Lee F++n++++ +++e LA+kl+L  rqV vWFqNrRa+ k
  XP_010924919.1  95 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTK 148
                     67789***********************************************98 PP
2HD-ZIP_I/II122.52.1e-3995182290
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr +
  XP_010924919.1  95 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 182
                     9*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-1881148IPR009057Homeodomain-like
SuperFamilySSF466892.72E-1986151IPR009057Homeodomain-like
PROSITE profilePS5007117.15190150IPR001356Homeobox domain
SMARTSM003892.9E-1692154IPR001356Homeobox domain
CDDcd000867.83E-1593151No hitNo description
PfamPF000462.6E-1695148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PfamPF021837.1E-10150183IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.9E-23150193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVLFFLIVKV FDLFVLLFFL LCALEFFRMG DFRGSPSGLE LTIAVPGLSS SSGSEGGGCN  60
MRELDINLPA SGAEEEFPMG SLEEEEEEGG TPRPKKLRLS KEQSRLLEES FRQNHTLNPK  120
QKEALAMKLK LRPRQVEVWF QNRRARTKLK QTEMECEYLK RCFGSLTEEN RRLQREVEEL  180
RALRVAPPTI LSPHTRQPMP ASALTMCPRC ERLTSTPRAA ATSAAAAAAT ARLPSASPFL  240
SRGHHSSSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924919.10.0homeobox-leucine zipper protein HOX3 isoform X1
SwissprotQ0JKX11e-101HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-101HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2H3WXR41e-124A0A2H3WXR4_PHODC; homeobox-leucine zipper protein HOX3-like
STRINGXP_008775283.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-58homeobox-leucine zipper protein 17