PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925032.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 292aa    MW: 32585.8 Da    PI: 6.5417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925032.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-17100196295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k+l++sd++++gr+vlpk+ ae+h   +  + ++++ + d++  ++W++k++y  ++ks++y+l  ++ ++ +a+gL+ gDf++ +  ++++ +
  XP_010925032.1 100 QKELSHSDASSLGRIVLPKREAEAHlpVLTARHGIEINMDDLETfQVWTFKYRYwpNNKSRMYILD-NTANYINAHGLQIGDFIIVYK-DDKKDR 192
                     799************************7788899*******5555*********777777777776.******************994.336666 PP

                     .EEE CS
              B3  92 lvvk 95 
                     lv++
  XP_010925032.1 193 LVIR 196
                     6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2693209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-2297199No hitNo description
SuperFamilySSF1019361.88E-1898197IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.92499201IPR003340B3 DNA binding domain
SMARTSM010193.0E-1299201IPR003340B3 DNA binding domain
PfamPF023627.6E-14100197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVGTRLTRTA IARAAKPSDT EAEDARADVP DLRSAVGFPA RRRRRTAARQ RPEVVQNVAA  60
LPSAAAETGR LPGARFSILD LNVPALDPDQ AVKGLRFLLQ KELSHSDASS LGRIVLPKRE  120
AEAHLPVLTA RHGIEINMDD LETFQVWTFK YRYWPNNKSR MYILDNTANY INAHGLQIGD  180
FIIVYKDDKK DRLVIRAKKA AKEQPASSAD DEIFDSIVPD IVVASVRYSD LYYPLLDSVS  240
MAYGMSNIYG DGLNYAFAAD FTMGFSEERM GNPSNAESLT RFGWNPSLDD LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-47952041110B3 domain-containing transcription factor FUS3
6j9b_D1e-47952041110B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045RRRRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925032.10.0B3 domain-containing protein LFL1
SwissprotA4LBC02e-49LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A2H3Z8J81e-164A0A2H3Z8J8_PHODC; B3 domain-containing protein LFL1-like
STRINGXP_008810033.11e-165(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]