PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925186.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 472aa    MW: 53042.1 Da    PI: 9.0873
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925186.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.4e-16133192155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_010925186.1 133 SRFRGVSRHRWTGRFEAHLWDkGSWNAtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 192
                     789******************999988876447*************************98 PP
2AP249.11.5e-15235286155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010925186.1 235 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 286
                     89****************99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-12133192IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-16133202IPR016177DNA-binding domain
PROSITE profilePS5103219.73134200IPR001471AP2/ERF domain
SMARTSM003804.1E-24134206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-15134201IPR001471AP2/ERF domain
PRINTSPR003673.9E-5135146IPR001471AP2/ERF domain
PfamPF008474.9E-11235286IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-17235296IPR016177DNA-binding domain
CDDcd000188.00E-23235296No hitNo description
SMARTSM003802.9E-25236300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17236295IPR001471AP2/ERF domain
PROSITE profilePS5103218.294236294IPR001471AP2/ERF domain
PRINTSPR003673.9E-5276296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MPLSHPSAVR AALDNPHCSS GHPHRPLTIR TVLRLPLHIV GTTLRPSTAR VTSDRPWEVG  60
REESMDVKLV KSEVDSNGRR LLGMATGPQD SSETVKFLKR RRREPAFLAT ATDSNGEIID  120
QSATSNTTVK RSSRFRGVSR HRWTGRFEAH LWDKGSWNAT QRKKGKQVYL GAYDEEEAAA  180
RAYDLAALKY WGPTTFTNFP VSHYEKEIQI MQNMTKEEYL ASLRRKSSGF SRGISKYRGV  240
AKHHHNGRWE ARIGRVFGNK YLYLGTYSTQ EEAAHAYDIA AIEYRGINAV TNFDLSTYIR  300
WQRPGATNSL NNTLVHHVSR EAHAEQPLTN LFATAESGTL SHCNPFVSED MISPCKQEFV  360
PHDFPGSSSS CKSSPTALSL LFKSSMFRQL VEKNSNAPNV ETEGEDIKDQ RQQLGADNEY  420
HQIFYEGIAD ASYGYSPNGD NKQGMGLQES ISYYDRSEQA IWNGVVNVAS LQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706827.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2H3Z9D80.0A0A2H3Z9D8_PHODC; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_008810103.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-81AP2 family protein