PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925260.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 712aa MW: 80912.2 Da PI: 6.9092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925260.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79	8.7e-25	85	172	2	89
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA+++GF r+ +s++sk ++ ++++fvCskeg +++ +++ +++r+r + r gCka+++v ++ +++w+v+kle+ HnH+l XP_010925260.1 85 FYNDYARRLGFPFRVGRSRRSKGvEEVLIMKRFVCSKEGIYQKKPSSEGTRKRERISMREGCKAMMEVIRD-SDRWVVSKLEKAHNHHL 172 *******************761556799***********9999***************999.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-21	85	172	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-28	265	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.449	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.9E-10	546	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-7	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MESARTEGDD LMEDYVKCLM SLDTNARPGE SDNSILPAPA EEPTSIPVRT TEQSPTKELA 60 SVGTEEPNEP TLGMEFESDE AAKTFYNDYA RRLGFPFRVG RSRRSKGVEE VLIMKRFVCS 120 KEGIYQKKPS SEGTRKRERI SMREGCKAMM EVIRDSDRWV VSKLEKAHNH HLGTCSRVGY 180 LRARGFIDTS EKASIVASDA MTLLRQNAFG EGGDAQGLLD YFKRMQAENP AFFYAIQVDN 240 NSCVTNAFWA DAKARSAYSC FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QPVIFGCALL 300 IDETEFSFIW LFETWLAAMG GRPPVSLVTD QNRAMTAAIT KVFPNTCHRF CKWLILSRSK 360 QKLAHVYSAH PMLRGELEKC VIESETVRAF ETTWVLIIDK YDLRKNTWLQ ALFNIRERWI 420 PLYLKGTFFA ELSPTQKLET MNDFYKKYFN TKTSLKVFLT QFELAVASQF EDEAQADSNT 480 VWTKPVLKTA SPIEKQAAAI YTRAVFNKFQ EEFVESLGYN VYRIKDGTVS KFSVARDEDS 540 LETFTVTYNS VKKTATCTCK NFEFSGILCR HILGVFLMVD LRMLPEEYFL KRWTRHAKSC 600 PILDECSVEL QCSSHESITS RYNDLCHDAL KCAEKGATSI EIYKSAKNVL QKAFAEIVAF 660 EKNTGRGAQR DAININEEIT IDDAMNDQAL QDSERKVTNL LGQLLGSSWS PV

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MESARTEGDD LMEDYVKCLM SLDTNARPGE SDNSILPAPA EEPTSIPVRT TEQSPTKELA  60
SVGTEEPNEP TLGMEFESDE AAKTFYNDYA RRLGFPFRVG RSRRSKGVEE VLIMKRFVCS  120
KEGIYQKKPS SEGTRKRERI SMREGCKAMM EVIRDSDRWV VSKLEKAHNH HLGTCSRVGY  180
LRARGFIDTS EKASIVASDA MTLLRQNAFG EGGDAQGLLD YFKRMQAENP AFFYAIQVDN  240
NSCVTNAFWA DAKARSAYSC FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QPVIFGCALL  300
IDETEFSFIW LFETWLAAMG GRPPVSLVTD QNRAMTAAIT KVFPNTCHRF CKWLILSRSK  360
QKLAHVYSAH PMLRGELEKC VIESETVRAF ETTWVLIIDK YDLRKNTWLQ ALFNIRERWI  420
PLYLKGTFFA ELSPTQKLET MNDFYKKYFN TKTSLKVFLT QFELAVASQF EDEAQADSNT  480
VWTKPVLKTA SPIEKQAAAI YTRAVFNKFQ EEFVESLGYN VYRIKDGTVS KFSVARDEDS  540
LETFTVTYNS VKKTATCTCK NFEFSGILCR HILGVFLMVD LRMLPEEYFL KRWTRHAKSC  600
PILDECSVEL QCSSHESITS RYNDLCHDAL KCAEKGATSI EIYKSAKNVL QKAFAEIVAF  660
EKNTGRGAQR DAININEEIT IDDAMNDQAL QDSERKVTNL LGQLLGSSWS PV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925259.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_010925260.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2H3XLD1	0.0	A0A2H3XLD1_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008785341.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-171	FAR1-related sequence 5