PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925346.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 150aa    MW: 16654.8 Da    PI: 8.5202
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925346.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.11.9e-13231101298
           NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi.aaavtrtdifdflvdivpr 98 
                     +++++ + +lP+ r+kki+k d ++k++ +ea  l+s + +lf+  l+  +   a  +krrt+k   + +aa ++  + dfl+d  pr
  XP_010925346.1  23 ESSEVLRPSLPMGRVKKIVKLDREIKKVNSEALFLISLSTDLFLRSLASSARDAALLSKRRTIKLDHLrSAACSHPPTSDFLLDSLPR 110
                     566778889*******************************************************9999346788999********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-1524113IPR009072Histone-fold
PfamPF008081.7E-143193IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.5E-1832110IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEDQEDRRQG QEEQGEEGEE EGESSEVLRP SLPMGRVKKI VKLDREIKKV NSEALFLISL  60
STDLFLRSLA SSARDAALLS KRRTIKLDHL RSAACSHPPT SDFLLDSLPR PSPPSKPAAR  120
PRPAAASEKP LPPGARRIDD FFRKPTADSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925346.11e-101chromatin accessibility complex protein 1
RefseqXP_010925347.11e-101chromatin accessibility complex protein 1
TrEMBLA0A2H3XNS75e-61A0A2H3XNS7_PHODC; uncharacterized protein LOC103704877
STRINGXP_008786575.18e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-26nuclear factor Y, subunit C13