PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925385.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 210aa MW: 23257.1 Da PI: 5.6314

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925385.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.3e-31	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+ +d ++v++tYeg Hnh XP_010925385.1 109 LDDGFKWRKYGKKSVKNSPNPRNYYRCSHEGCAVKKRVERDPQDSSYVITTYEGVHNHA 167 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.4E-33	98	169	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-28	101	169	IPR003657	WRKY domain
PROSITE profile	PS50811	30.756	104	169	IPR003657	WRKY domain
SMART	SM00774	5.1E-36	109	168	IPR003657	WRKY domain
Pfam	PF03106	1.2E-24	110	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAAPLGFTEM SYPSFFLEDS PAGVPGCYFF PVEVSDESML GVCNGVATDE ALFEDSLLAG 60 DLNTLVSSDC SLNAPTTGLV MNCGNDMKRM KVDAGCRIGF RTKSDVDILD DGFKWRKYGK 120 KSVKNSPNPR NYYRCSHEGC AVKKRVERDP QDSSYVITTY EGVHNHASPS TVRYEEFGLH 180 QAKTSAWESY AQLPLVVPNV YRMQAAHSSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	99	170	7	78	Probable WRKY transcription factor 4
2lex_A	1e-24	99	170	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925385.1	1e-158	probable WRKY transcription factor 57
TrEMBL	A0A2H3Y4E9	1e-120	A0A2H3Y4E9_PHODC; probable WRKY transcription factor 51
STRING	XP_008793281.1	1e-121	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-41	WRKY DNA-binding protein 51