PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925387.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 165aa MW: 18356.7 Da PI: 7.0135

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925387.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	87	145	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+ edp++v++tYeg Hnh+ XP_010925387.1 87 LDDGFKWRKYGKKSVKDSPNPRNYYRCATEGCGVKKRVERDGEDPSYVITTYEGVHNHT 145 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-32	75	147	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-28	79	147	IPR003657	WRKY domain
PROSITE profile	PS50811	31.054	82	147	IPR003657	WRKY domain
SMART	SM00774	3.6E-35	87	146	IPR003657	WRKY domain
Pfam	PF03106	1.7E-24	88	144	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAYFPSQSTD WAMAMSLAFG HHSCLPMALN PLNYTLFDED SVACQLERPV PLMASDSGSR 60 IYGSGMQTPK EGVCRVAFRT KSEIDILDDG FKWRKYGKKS VKDSPNPRNY YRCATEGCGV 120 KKRVERDGED PSYVITTYEG VHNHTSPAVI YFKPDGHDSA GSLLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-28	77	148	7	78	Probable WRKY transcription factor 4
2lex_A	5e-28	77	148	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925387.1	1e-123	probable WRKY transcription factor 51 isoform X2
Swissprot	Q93WU9	6e-40	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2H3Y507	2e-88	A0A2H3Y507_PHODC; probable WRKY transcription factor 51
STRING	XP_008793279.1	2e-87	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-42	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]