PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925444.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 176aa MW: 19963.3 Da PI: 10.0901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925444.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.7e-07	13	62	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 + +E++RR +++ ++L +l+Pk+ + sk l+ + L +A Y+k+L XP_010925444.1 13 KTVEKNRRLYMKNLCFKLASLIPKDQYTISKDtLTQEDQLDQAASYVKKL 62 689*******************655666666*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.715	7	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-8	9	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-9	11	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKTCGRATKL ERKTVEKNRR LYMKNLCFKL ASLIPKDQYT ISKDTLTQED QLDQAASYVK 60 KLKERVERLK QRKEMALRSR GPDNISGRVL SSFSLPVIDV RHLDSTLEVF IVSGLSKGII 120 FRDVLCVLEE EGAEAINASF SIAGDKIFCT IHSQAISSRI GFEAPRVCER LKRLVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925444.1	1e-126	transcription factor bHLH162
TrEMBL	A0A2H3XEA2	2e-68	A0A2H3XEA2_PHODC; transcription factor bHLH167-like
STRING	XP_008801995.1	1e-69	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	9e-27	bHLH family protein