PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925572.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 135aa    MW: 15606.2 Da    PI: 6.9774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925572.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99e-35161072102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++++ +isw +++nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll++
  XP_010925572.1  16 FVLKTYRMVNDPATDPMISWGKDNNSFVVGDPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHSSFLRGQTHLLRR 101
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r++s
  XP_010925572.1 102 IVRRSS 107
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.8E-5212105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.93E-3514105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-3814105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEDGSGNGSA LVAAPFVLKT YRMVNDPATD PMISWGKDNN SFVVGDPFVF SQTLLPAHFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFAHSS FLRGQTHLLR RIVRRSSGNS KEAEAEEEEE  120
EEEEEGEGRR RRRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-241611020125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794137.11e-67heat stress transcription factor C-2b-like
SwissprotQ6EUG48e-58HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A2H3Y7163e-66A0A2H3Y716_PHODC; heat stress transcription factor C-2b-like
STRINGXP_008794137.15e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-47heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]