PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925776.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 195aa    MW: 22305.7 Da    PI: 6.6336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925776.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W+  ar  g++Rt+k+c++rw++yl
   XP_010925776.1 15 KGPWTMEEDLILINYIANHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.65.1e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ d+++++G++ W++Ia+ ++ gRt++++k++w++
   XP_010925776.1  68 RGNITPEEQLLIMDLHARWGNR-WSKIAKQLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23865IPR009057Homeodomain-like
PROSITE profilePS5129415.3471062IPR017930Myb domain
SuperFamilySSF466892.02E-3013109IPR009057Homeodomain-like
SMARTSM007173.1E-131464IPR001005SANT/Myb domain
PfamPF002493.2E-161562IPR001005SANT/Myb domain
CDDcd001673.05E-101762No hitNo description
PROSITE profilePS5129425.21863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2466118IPR009057Homeodomain-like
SMARTSM007176.0E-1467115IPR001005SANT/Myb domain
PfamPF002492.0E-1568111IPR001005SANT/Myb domain
CDDcd001677.14E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDKTINSSQE AAVRKGPWTM EEDLILINYI ANHGEGVWNN LARSAGLNRT GKSCRLRWLN  60
YLKPDVRRGN ITPEEQLLIM DLHARWGNRW SKIAKQLPGR TDNEIKNYWR TRIQKKVKHG  120
ESFDYQHAMV TDEASTSTTS TSQTNSVEDV APQPSYTEHQ ATDPHALAPP FSSTESSDNF  180
WTVEDFWSMH SLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925776.21e-146LOW QUALITY PROTEIN: myb-related protein 305-like
SwissprotP813912e-88MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2H3YLY21e-122A0A2H3YLY2_PHODC; myb-related protein 305-like
STRINGXP_008800726.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.18e-77myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]