PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925788.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 201aa    MW: 23114.7 Da    PI: 6.2484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925788.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.1e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G g W+  ar  g++Rt+k+c++rw++yl
   XP_010925788.1 22 KGPWTKEEDLILINYIANHGEGAWNNLARSAGLNRTGKSCRLRWLNYL 69
                     79********************************************97 PP
2Myb_DNA-binding513.4e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ d+++++G++ W++Ia+ ++ gRt+ ++k++w++
   XP_010925788.1  75 RGNITPEEQLLIMDLHARWGNR-WSKIAKQLP-GRTDHEIKNYWRT 118
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-241572IPR009057Homeodomain-like
PROSITE profilePS5129417.5121769IPR017930Myb domain
SuperFamilySSF466891.17E-3020116IPR009057Homeodomain-like
SMARTSM007173.6E-152171IPR001005SANT/Myb domain
PfamPF002497.9E-172269IPR001005SANT/Myb domain
CDDcd001672.06E-112469No hitNo description
PROSITE profilePS5129424.19770124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2373124IPR009057Homeodomain-like
SMARTSM007175.2E-1374122IPR001005SANT/Myb domain
PfamPF002491.2E-1475118IPR001005SANT/Myb domain
CDDcd001674.21E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVEEANGMDK RINSSQEAEV RKGPWTKEED LILINYIANH GEGAWNNLAR SAGLNRTGKS  60
CRLRWLNYLR PDVRRGNITP EEQLLIMDLH ARWGNRWSKI AKQLPGRTDH EIKNYWRTRI  120
QKRVEHGESF DYHQAMVIDE ASASTITSQT NSVEDIGPQP SYIERQAPNP DAFAPHFSST  180
ECSNNFWSVE DLWSMQSLSG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-271912424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925788.11e-150myb-related protein 305-like
SwissprotP813912e-82MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2H3YLY21e-119A0A2H3YLY2_PHODC; myb-related protein 305-like
STRINGXP_008800726.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-75myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]