PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925915.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 256aa    MW: 26880.9 Da    PI: 7.9831
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925915.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.7e-20135169135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  XP_010925915.1 135 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 169
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-19129180IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.969132165IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-14132174No hitNo description
Gene3DG3DSA:3.30.50.102.3E-17133169IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.87E-14134166No hitNo description
PfamPF003205.9E-18135169IPR000679Zinc finger, GATA-type
PROSITE patternPS003440135160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLHQCGQHSG GGVSTPCSCG FLYGACGGSG STSFSILFPG KQSSMDEVFD SGYPITSSSS  60
VDCTLSLGTP STRDADALKP SSSSTLNQRP SCVSSLCWDV LSQSNKQPSM ASGGVNGSTN  120
SSNLGADPVL LARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRYKKEERR AAASTASPTS  180
SVVTATAEQT GIGYAYQRRQ PQQPWSCYGS MVTASKSPTM STYGDVMDEG EASYLSWRLN  240
VIPSAQFPVR DLPGLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925915.10.0GATA transcription factor 19
TrEMBLA0A2H3YYG91e-159A0A2H3YYG9_PHODC; GATA transcription factor 19-like
STRINGXP_008805393.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-33GATA family protein