PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925931.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 586aa    MW: 65484.8 Da    PI: 4.8233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925931.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.51.3e-1382165862374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA a+s+g++e+a++++++l++++s +gdp qRlaay++e+Laar+a+s+ +lykal+++e +   +s++l+a+++++ev+P++kf+++
  XP_010925931.1 216 KQLLFDCASAISEGSMEEAKTIISELRQIVSIQGDPPQRLAAYLVEGLAARIASSGRGLYKALKCKEPP---TSDRLSAMQILFEVCPCFKFGFM 307
                     589*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea++ eervHiiDfdi+qG Q+++L+q+LasRp++pp+lRiTgv++pes+  s   l+ +g rL+k+Aeel+vpfef++ +a +++d+
  XP_010925931.1 308 AANYAIAEAFKDEERVHIIDFDINQGSQYITLIQTLASRPSKPPRLRITGVDDPESVqrSVGGLRIIGMRLEKLAEELEVPFEFRA-IAAKTADV 401
                     *******************************************************9989999************************.6999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+++pgEa++Vn+++qlh+++desvs+ ++rd++L++vk+l Pk+v+vveq+++ n+++F+ rf+e  +yysa+f+sl+a+lpres +r++
  XP_010925931.1 402 TPSMLDCQPGEAIIVNFAFQLHHMPDESVSTVNQRDQLLRMVKGLGPKLVTVVEQDVNANTAPFFPRFVEVYNYYSAVFESLDATLPRESADRMN 496
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF + p+s ++++++++ll+  + d y+++ e+g+l++gW+d++Lv++SaW+
  XP_010925931.1 497 VERQCLARDIVNIVACEGTERIERYEAAGKWRARMTMAGFLSSPFSAHVNETIRTLLKSAYCDRYMLKVENGALYFGWEDKTLVVASAWK 586
                     *************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.047189566IPR005202Transcription factor GRAS
PfamPF035144.5E-136216586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSLIRSADSS ASSYGESNLY ARKRSGDRAD LSMQTFASDS RMYHYGPDSY RSEIYDQQYF  60
RSSPGLAHGN PLHVSNSAIP GSVFRPQVSS ASYHLMADTR SSIITENPYN ACFAAIRHPE  120
SSLSSNISNQ TSLSLSDNQS PEHKMDYDED EVRLKLQELE QALLNDNDEF VDDEMGVEDE  180
WVEPIKDLLL PNSPKESSSD SSVSCIVSNR ETRTPKQLLF DCASAISEGS MEEAKTIISE  240
LRQIVSIQGD PPQRLAAYLV EGLAARIASS GRGLYKALKC KEPPTSDRLS AMQILFEVCP  300
CFKFGFMAAN YAIAEAFKDE ERVHIIDFDI NQGSQYITLI QTLASRPSKP PRLRITGVDD  360
PESVQRSVGG LRIIGMRLEK LAEELEVPFE FRAIAAKTAD VTPSMLDCQP GEAIIVNFAF  420
QLHHMPDESV STVNQRDQLL RMVKGLGPKL VTVVEQDVNA NTAPFFPRFV EVYNYYSAVF  480
ESLDATLPRE SADRMNVERQ CLARDIVNIV ACEGTERIER YEAAGKWRAR MTMAGFLSSP  540
FSAHVNETIR TLLKSAYCDR YMLKVENGAL YFGWEDKTLV VASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6922258526378Protein SCARECROW
5b3h_A4e-6922258525377Protein SCARECROW
5b3h_D4e-6922258525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925930.10.0scarecrow-like protein 1
RefseqXP_010925931.10.0scarecrow-like protein 1
RefseqXP_010925932.10.0scarecrow-like protein 1
RefseqXP_019707392.10.0scarecrow-like protein 1
RefseqXP_019707393.10.0scarecrow-like protein 1
RefseqXP_019707394.10.0scarecrow-like protein 1
RefseqXP_019707395.10.0scarecrow-like protein 1
RefseqXP_019707396.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2H3ZJL30.0A0A2H3ZJL3_PHODC; scarecrow-like protein 1
STRINGXP_008806489.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]