PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926039.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 314aa MW: 35703.5 Da PI: 8.0368

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926039.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.5e-56	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv++ ++++ ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_010926039.1 5 LPPGFRFHPTDEELITYYLIRKVSDFRFTA-KAIADVDLNKYEPWDLPGKASMGEKEWYFFSLRDRKYPTGMRTNRATDAGYWKTTGKDKEIFH- 97 79***********************999.88***********988999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgekt+Wvmheyrl XP_010926039.1 98 CAVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130 99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-63	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.837	5	151	IPR003441	NAC domain
Pfam	PF02365	2.2E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLIRKVSDF RFTAKAIADV DLNKYEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGMRTNRA TDAGYWKTTG KDKEIFHCAV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL HTKFPYRTTK EEWVVCRVFK KNSDIKKTQP NTSPLPPLLE SPCSATSLSE 180 LGELDVPTLS NLVYTSNGPD GMLTADNINN KVDMNMYMNW VLGREATSQP SLPWSSGLLS 240 MGYSPSPAIL KAMPFNGYQP QEATNLTSSS SFTVHGDPIL GNESKLSFPP SSFKGTEITQ 300 QEQPLDQESI WRGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-58	4	157	19	174	NAC domain-containing protein 19
3swm_B	3e-58	4	157	19	174	NAC domain-containing protein 19
3swm_C	3e-58	4	157	19	174	NAC domain-containing protein 19
3swm_D	3e-58	4	157	19	174	NAC domain-containing protein 19
3swp_A	3e-58	4	157	19	174	NAC domain-containing protein 19
3swp_B	3e-58	4	157	19	174	NAC domain-containing protein 19
3swp_C	3e-58	4	157	19	174	NAC domain-containing protein 19
3swp_D	3e-58	4	157	19	174	NAC domain-containing protein 19
4dul_A	2e-58	4	157	16	171	NAC domain-containing protein 19
4dul_B	2e-58	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926039.1	0.0	NAC domain-containing protein 92
TrEMBL	A0A2H3Z1S3	0.0	A0A2H3Z1S3_PHODC; NAC domain-containing protein 100-like
STRING	XP_008807109.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	2e-98	NAC domain containing protein 58