PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926054.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 239aa    MW: 27035.6 Da    PI: 8.8054
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926054.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ede+l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_010926054.1 13 KGAWSKQEDEKLIDYIRNHGEGSWRSLPKAAGLLRCAKSCRLRWINYL 60
                     79******************************99************97 PP
2Myb_DNA-binding52.61e-1666111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_010926054.1  66 RGNFAEDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 111
                      8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-23463IPR009057Homeodomain-like
PROSITE profilePS5129416.147860IPR017930Myb domain
SuperFamilySSF466891.2E-2711107IPR009057Homeodomain-like
SMARTSM007174.1E-121262IPR001005SANT/Myb domain
PfamPF002492.4E-151360IPR001005SANT/Myb domain
CDDcd001677.34E-101560No hitNo description
PROSITE profilePS5129425.96861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2564116IPR009057Homeodomain-like
SMARTSM007171.9E-1565113IPR001005SANT/Myb domain
PfamPF002494.9E-1566111IPR001005SANT/Myb domain
CDDcd001671.06E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRKPCCDKRD TNKGAWSKQE DEKLIDYIRN HGEGSWRSLP KAAGLLRCAK SCRLRWINYL  60
QPNIKRGNFA EDEEDLIVKL HALLGNRWSL IAGRLPGRTD NEIKNYWNSH LRRKLINMGI  120
DPNNHHVSQS LSLHRPQISG SATLSGGPVN HERKKWQQYL ISMTDNDRVS DTGSCLPSKK  180
GAASCLEDNA YVLPDLNLDL TMSIPSPSTT FAEWKQESAE LEAPSELGNA TNQTLLLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926054.11e-178transcription factor MYB8
SwissprotQ9SZP14e-75MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2H3YZP51e-150A0A2H3YZP5_PHODC; transcription factor MYB8-like
STRINGXP_008806257.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-77myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]