PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926187.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

CO-like

Protein Properties

Length: 422aa MW: 46304.1 Da PI: 6.2337

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926187.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.4	1.9e-05	2	34	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 e+ C+ + +++ +C+++ lC C + +H+ XP_010926187.1 2 EPLCEFCWTQRALVYCKSDAARLCLPCDSFIHS 34 689****************************95 PP
2	zf-B_box	21.2	5.8e-07	46	90	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee.........HkgHtv 39 +C+++ ++++ C d++ lC+dC + H++Htv XP_010926187.1 46 LICDRCLSQPAAVRCLDDRLSLCQDCDWGSpgcpgpghrHRRHTV 90 69*************************999999999966666876 PP
3	CCT	57	7e-20	374	415	1	42
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 R++a++RY+eK+k+R+F K+irY+sRKa+A++R+RvKG + + XP_010926187.1 374 RNEAKMRYNEKKKSRLFGKQIRYASRKARADTRKRVKGTWLR 415 99************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.5E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.774	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.27E-5	3	47	No hit	No description
CDD	cd00021	3.46E-6	47	90	No hit	No description
PROSITE profile	PS51017	13.433	374	416	IPR010402	CCT domain
Pfam	PF06203	2.0E-14	374	414	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MEPLCEFCWT QRALVYCKSD AARLCLPCDS FIHSANALSR RHLRALICDR CLSQPAAVRC 60 LDDRLSLCQD CDWGSPGCPG PGHRHRRHTV NCYSGCPSLP ELSRMWSSVL DIPPVRGKAG 120 GPGMVTIDEN NASTCWEPGE DASSVGLPMV GMLGDLEPCA KFDPWMASSS SMMPEIGSMT 180 PCGGEQQGLF HKESNVPKLG CPPFRDLGIC DEDELCEGFG TGDRGFSNDN NEMFGCPQNL 240 PRYPFQEAGS DGFLTEKNFS VADSNGHIDH AVEVSSSVQH DCMTLQSSRM VGPAGAVQAL 300 NSNPDQLLLN FNGNRNVSLY FPSGNVCPNI SLSLSNLTGE SSAADYQDCG VSPMFLTGES 360 PWDSNLETGR PQARNEAKMR YNEKKKSRLF GKQIRYASRK ARADTRKRVK GTWLRSFRDD 420 SR

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MEPLCEFCWT QRALVYCKSD AARLCLPCDS FIHSANALSR RHLRALICDR CLSQPAAVRC  60
LDDRLSLCQD CDWGSPGCPG PGHRHRRHTV NCYSGCPSLP ELSRMWSSVL DIPPVRGKAG  120
GPGMVTIDEN NASTCWEPGE DASSVGLPMV GMLGDLEPCA KFDPWMASSS SMMPEIGSMT  180
PCGGEQQGLF HKESNVPKLG CPPFRDLGIC DEDELCEGFG TGDRGFSNDN NEMFGCPQNL  240
PRYPFQEAGS DGFLTEKNFS VADSNGHIDH AVEVSSSVQH DCMTLQSSRM VGPAGAVQAL  300
NSNPDQLLLN FNGNRNVSLY FPSGNVCPNI SLSLSNLTGE SSAADYQDCG VSPMFLTGES  360
PWDSNLETGR PQARNEAKMR YNEKKKSRLF GKQIRYASRK ARADTRKRVK GTWLRSFRDD  420
SR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926187.1	0.0	putative zinc finger protein CONSTANS-LIKE 11 isoform X2
TrEMBL	A0A3Q0HUX2	0.0	A0A3Q0HUX2_PHODC; putative zinc finger protein CONSTANS-LIKE 11
STRING	XP_008782231.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-81	B-box type zinc finger protein with CCT domain