PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926272.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 318aa    MW: 35033.1 Da    PI: 5.1946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926272.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20146195255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_010926272.1 146 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 195
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-32146204IPR001471AP2/ERF domain
SMARTSM003802.3E-37146209IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-23146205IPR016177DNA-binding domain
PROSITE profilePS5103223.42146203IPR001471AP2/ERF domain
CDDcd000181.11E-33147205No hitNo description
PfamPF008471.4E-14147195IPR001471AP2/ERF domain
PRINTSPR003672.8E-11147158IPR001471AP2/ERF domain
PRINTSPR003672.8E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MATAIDMFNS SSDPLREELM LALEPFIGRV PTFPSFIPSS NTTTTESLSS SLSPPPFSWS  60
YSSPFSSSSS SYSYQNPTMD CYSQSFALPG HLSPVQIQQI QAQLLLHQQQ QAMAASAPQQ  120
RSLLGVRPQL MKRSGSPPPP PKPSKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE  180
EAALAYDRAA YKLRGDAARL NFPPSRHGGA HSTSLLSVDA KLQAICQSLP TSKREGDGSP  240
ESVIPEGVVA KGELDCSVSE DNKSESSSSL EGDESSSAVS EMQYLDFTEA PWDESESFML  300
RKYPSWEIDW DSILSSGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21145203160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926272.10.0ethylene-responsive transcription factor ERF060
TrEMBLA0A2H3XDL91e-121A0A2H3XDL9_PHODC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_008782127.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-37related to AP2 4