PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926338.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 260aa    MW: 29586.7 Da    PI: 4.5045
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926338.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1957110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe +++++ +++++LA+ lgL+ rqV +WFqNrRa++k
  XP_010926338.1  57 KKRRLSVDQVKTLEKNFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWK 110
                     456899***********************************************9 PP
2HD-ZIP_I/II128.43e-4156148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe e+kL+p+rK++la++Lglqprqva+WFqnrRAR+ktkqlE+dy aL+++y++lk + ++L++++e+L +e+++
  XP_010926338.1  56 EKKRRLSVDQVKTLEKNFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWKTKQLERDYGALRTRYETLKIDCDTLRHDKEKLISEIEA 148
                     69*************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.98952112IPR001356Homeobox domain
SuperFamilySSF466894.28E-1952114IPR009057Homeodomain-like
SMARTSM003896.6E-1955116IPR001356Homeobox domain
CDDcd000861.27E-1657113No hitNo description
PfamPF000461.1E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2059119IPR009057Homeodomain-like
PRINTSPR000316.8E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000316.8E-692108IPR000047Helix-turn-helix motif
PfamPF021835.0E-16112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTKHSSSDSF GSLQEKETVQ EKGKYEDRFQ SMMDGAEEVE CEEEELCSNG QSALGEKKRR  60
LSVDQVKTLE KNFEVENKLD PDRKARLAQD LGLQPRQVAI WFQNRRARWK TKQLERDYGA  120
LRTRYETLKI DCDTLRHDKE KLISEIEALK AKLTNSATIT ILENKEAEER PALIYRDGAS  180
DSDSSVVFND ENSPYSGVVL DQDYFAGFKS YSSSSPSLFE SRALGQKDYL AEGFLSGEEL  240
CSALFSEEQE ASLSWYCSEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187DRKARLA
2104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926338.10.0homeobox-leucine zipper protein HOX8
SwissprotQ338Z75e-55HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
SwissprotQ6V9S93e-55HOX8_ORYSI; Homeobox-leucine zipper protein HOX8
TrEMBLA0A2H3XDH81e-149A0A2H3XDH8_PHODC; homeobox-leucine zipper protein HOX13-like
STRINGXP_008782176.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-55homeobox protein 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]