PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926365.1
Common NameSTMADS11-1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26001.7 Da    PI: 7.0636
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926365.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeEL +LCda+va+iifsstgkl+e+ss
  XP_010926365.1 10 KIDNATARQVTFSKRRRGLFKKAEELAILCDADVALIIFSSTGKLFEFSS 59
                    69**********************************************96 PP
2K-box58.82.3e-20901711899
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++L k++ +   ++R++ Ge+L+ L+++eLqqLe++Le++l+ + ++K + ++eqi++lq+k   l een++Lrk++ 
  XP_010926365.1  90 NSNYTRLDKQVAEASLQLRQMRGEELQGLTMQELQQLEKNLETGLSCVLERKGQQIMEQINHLQQKGMHLMEENERLRKQVV 171
                     57899**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.151161IPR002100Transcription factor, MADS-box
CDDcd002653.73E-40277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-30374IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.1186176IPR002487Transcription factor, K-box
PfamPF014861.7E-1791170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELAILCD ADVALIIFSS TGKLFEFSSS  60
SMKEILEKHS LHSKNLQKVE PPSLDLNLEN SNYTRLDKQV AEASLQLRQM RGEELQGLTM  120
QELQQLEKNL ETGLSCVLER KGQQIMEQIN HLQQKGMHLM EENERLRKQV VEMARAGRRV  180
LTDSENVMYE DGQSSESVTN ASQLVVPPNY DDSSDTSLKL GLPVHNMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20170170MEF2C
5f28_B2e-20170170MEF2C
5f28_C2e-20170170MEF2C
5f28_D2e-20170170MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926365.11e-167MADS-box protein JOINTLESS isoform X1
RefseqXP_010926366.11e-167MADS-box protein JOINTLESS isoform X1
RefseqXP_019707170.11e-167MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY61e-104JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLQ2NNB91e-160Q2NNB9_ELAGV; MADS box transcription factor
STRINGGSMUA_Achr10P19290_0011e-117(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]