PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926425.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 252aa    MW: 28021.5 Da    PI: 5.759
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926425.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.92.7e-197861998
           NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    +++P +rikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v++   fdfl+d+v +
  XP_010926425.1  7 TRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKSYSAFDFLTDVVNK 86
                    579**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-25372IPR009072Histone-fold
SuperFamilySSF471131.37E-19388IPR009072Histone-fold
PfamPF008088.8E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK  60
TLNSLHLKQC VKSYSAFDFL TDVVNKVPNL GSTEPCGDEK GISRRRKTLA HDGDLETNKE  120
LRSPKMAMRS ANISPRGRGR GRGRGRGRPR TRDIGCVKFE DDNDMFPEHG DLSRETEGEE  180
KGLEGKENMV QSVHPSCSSA SVEGATSTAE AKHDEFSAWP LPDVVGNIDV EPSKLVQLTM  240
QIDEDEDYDN ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-22271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107SRRRKT
2137146RGRGRGRGRG
3141151RGRGRGRPRTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926425.10.0dr1-associated corepressor homolog isoform X1
TrEMBLA0A2H3XDM71e-146A0A2H3XDM7_PHODC; dr1-associated corepressor homolog isoform X1
STRINGXP_008782237.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-53nuclear factor Y, subunit C11