PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926472.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 651aa    MW: 68980 Da    PI: 5.1167
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926472.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.96.9e-1372516361374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l++a+ l++++s la+++g +m+++a yf+eALa+r++r        ++p ++ + + + +      f+e +P+lkf+h
  XP_010926472.1 251 LVHTLMACAEAVQQDNLKAADVLVKQISMLAASQGGAMRKVAGYFAEALARRIYR--------VHPHQDCSLDAAFSDILEMHFYESCPYLKFAH 337
                     689****************************************************........55555553333333333345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gppslR+Tg+g+p+++++++l+++g++La++A++++v+f+++  va++l+dle
  XP_010926472.1 338 FTANQAILEAFAGCRRVHVIDFSMKQGMQWPALMQALALRPGGPPSLRLTGIGPPQTDNTDALQQVGWKLAQLADTIHVDFQYRGYVANSLADLE 432
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp...........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                       +++ +             E++aVn+v++lhrll+++++le+    vL +v+ ++P++v++veqea+hn++sFlerf+eal+yys++fdsle +
  XP_010926472.1 433 ACMFEADAsgngnggadeePEVVAVNSVFELHRLLARPGALEK----VLGTVRAVRPRIVTMVEQEANHNAGSFLERFTEALHYYSTMFDSLEGG 523
                     ****9988888999988889***********************....*********************************************888 PP

            GRAS 275 ...........lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                                +++   +++ ++++++lgr+i+nvv ceg+er+erhetl++Wr r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g
  XP_010926472.1 524 gtaaaaaaeaaVGASMgQQDLVMSEVYLGRQICNVVPCEGTERTERHETLGQWRGRMTRAGFEPVHLGSNAFKQASMLLALFAgGDGYRVEEKEG 618
                     899998888764444479***************************************************************************** PP

            GRAS 357 slvlgWkdrpLvsvSaWr 374
                     +l+lgW++rpL+++SaWr
  XP_010926472.1 619 CLTLGWHTRPLIATSAWR 636
                     *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011299.3E-3340116No hitNo description
PfamPF120414.4E-3640110IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.79225615IPR005202Transcription factor GRAS
PfamPF035142.4E-134251636IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MKREHQESVA AGGGYPAAAG MMSGGKGKMM GMEEEDGGVD ELLAALGYKV RASDMADVAQ  60
KLEQLEMAMT SSAAQDDAFL SHLASDTVHY NPSDLSTWLE SMLSELNAPP PPLPSAPIPN  120
NRSNQFELPP APASAVRAPI LDPGECSTIT TVDFPTPGRQ SEYDLKPIPA APGRVVYGSE  180
PLAEENARDR KRMRTSSSSS SSSRGGGIGV GVGGMGSAMP AATEASSVAA GAATGALPVV  240
VVDSQEAGIR LVHTLMACAE AVQQDNLKAA DVLVKQISML AASQGGAMRK VAGYFAEALA  300
RRIYRVHPHQ DCSLDAAFSD ILEMHFYESC PYLKFAHFTA NQAILEAFAG CRRVHVIDFS  360
MKQGMQWPAL MQALALRPGG PPSLRLTGIG PPQTDNTDAL QQVGWKLAQL ADTIHVDFQY  420
RGYVANSLAD LEACMFEADA SGNGNGGADE EPEVVAVNSV FELHRLLARP GALEKVLGTV  480
RAVRPRIVTM VEQEANHNAG SFLERFTEAL HYYSTMFDSL EGGGTAAAAA AEAAVGASMG  540
QQDLVMSEVY LGRQICNVVP CEGTERTERH ETLGQWRGRM TRAGFEPVHL GSNAFKQASM  600
LLALFAGGDG YRVEEKEGCL TLGWHTRPLI ATSAWRVAAA GAALPAASAA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6125863526378Protein SCARECROW
5b3h_A2e-6125863525377Protein SCARECROW
5b3h_D2e-6125863525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926472.10.0DELLA protein SLR1
SwissprotQ2TN880.0SLR1_ORYSI; DELLA protein SLR1
TrEMBLA0A2H3XDN80.0A0A2H3XDN8_PHODC; DELLA protein SLR1-like
STRINGXP_008782281.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein