PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926833.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

CAMTA

Protein Properties

Length: 940aa MW: 105240 Da PI: 6.3505

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926833.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	156.7	4.9e-49	13	127	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl+L+nr+++r++r+DGy w+kk +g+t E he+LKvg+ evl+cyYa++e+np fqrr XP_010926833.1 13 DaQTRWLKPVEVLFILHNHESFQLSNKPPDKPPSGSLLLFNRRVLRNYRNDGYLWRKKNNGRTLAESHEHLKVGAAEVLSCYYARGEQNPCFQRR 107 4499***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+L+ + e+iv+vhy++v XP_010926833.1 108 IYWMLDPANEHIVFVHYRDV 127 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.382	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-66	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-44	14	127	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.02E-15	375	459	IPR014756	Immunoglobulin E-set
CDD	cd00102	1.82E-4	376	459	No hit	No description
Gene3D	G3DSA:2.60.40.10	5.1E-5	376	467	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	5.2E-4	378	451	IPR002909	IPT domain
SuperFamily	SSF48403	1.71E-13	527	670	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-14	559	671	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.52E-7	564	668	No hit	No description
PROSITE profile	PS50297	14.53	576	668	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.499	609	641	IPR002110	Ankyrin repeat
SMART	SM00248	0.0011	609	638	IPR002110	Ankyrin repeat
SMART	SM00015	79	729	751	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.852	730	759	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.7E-5	774	826	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.22	779	801	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	781	800	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.632	781	809	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.11	802	824	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.919	803	828	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.4E-4	804	823	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MQEGFDINKL CKDAQTRWLK PVEVLFILHN HESFQLSNKP PDKPPSGSLL LFNRRVLRNY 60 RNDGYLWRKK NNGRTLAESH EHLKVGAAEV LSCYYARGEQ NPCFQRRIYW MLDPANEHIV 120 FVHYRDVAEG RFVPEPIFSV STESPSTFNQ TNSITDAQVQ GFPTQINELN EQCQNPCSSV 180 SVEEASSEFV TGKTEKPLLI KMDTSETYNQ PLLPEVNHAL RKLEEQLSLD DDDDGNGYIY 240 SEEKLHPSCN QNEKSEDLGI LNHETRDFVQ ETLDSLLDQL KHEANDHVEE GGQQDGSHAL 300 QMVKSPEFSR WSHGSHSLIN STSTINSCGA LSGLLTPGND NNTHGLETVL LTGNSVCSSS 360 GADFGLPVAQ KPWFNICEIS PEWAFSFERT KVIITGHFLC NPPGHSWAIL FGDAEVPLEI 420 VQEGVFRCLA PKHDPGKVKL RITSGNGEPC SDVREFEFRA NPGTSSFSST SKQGYAVMGT 480 EELLLLVRFV QLLLYGHDRT SIPQEGDVET CIDRSRKLKR NDDRLGEIVE ALLAGRETSA 540 NTMDWILQEL LKDKLQQWLL SKHLENADQT CVLSKQEQCI IHMISGLGYE WALNPILTSG 600 TGINFRDTKG WTALHWAACF GREKMVAALL AAGASAGAVT DPTPQEPAGK TPGSLAAAND 660 HKGLAGYLSE AALTNHLFSL AMGKSEISKT SGPVEADGGV ESISQRSAHL QGGTEDQLLL 720 KDSLAAVRNA TQAAARIQST FRAYSFWKKH QNADQDKDGF SPEDINGVFV AFRGLCDRAF 780 HKAALSIQKN YRCWKRRKEF VTLRKHVIKI QARVRAHQAR KKYELLLTVG ILEKIILRWC 840 RRRVGLRGFR ADPESINKEE ENDILKVFRK QKVDAALDEA VSSVLSMVDC PEAQQQYRRM 900 LESYRQAKAD LSKVETATSR VSGDWVSREL EDYLNQLGHE

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MQEGFDINKL CKDAQTRWLK PVEVLFILHN HESFQLSNKP PDKPPSGSLL LFNRRVLRNY  60
RNDGYLWRKK NNGRTLAESH EHLKVGAAEV LSCYYARGEQ NPCFQRRIYW MLDPANEHIV  120
FVHYRDVAEG RFVPEPIFSV STESPSTFNQ TNSITDAQVQ GFPTQINELN EQCQNPCSSV  180
SVEEASSEFV TGKTEKPLLI KMDTSETYNQ PLLPEVNHAL RKLEEQLSLD DDDDGNGYIY  240
SEEKLHPSCN QNEKSEDLGI LNHETRDFVQ ETLDSLLDQL KHEANDHVEE GGQQDGSHAL  300
QMVKSPEFSR WSHGSHSLIN STSTINSCGA LSGLLTPGND NNTHGLETVL LTGNSVCSSS  360
GADFGLPVAQ KPWFNICEIS PEWAFSFERT KVIITGHFLC NPPGHSWAIL FGDAEVPLEI  420
VQEGVFRCLA PKHDPGKVKL RITSGNGEPC SDVREFEFRA NPGTSSFSST SKQGYAVMGT  480
EELLLLVRFV QLLLYGHDRT SIPQEGDVET CIDRSRKLKR NDDRLGEIVE ALLAGRETSA  540
NTMDWILQEL LKDKLQQWLL SKHLENADQT CVLSKQEQCI IHMISGLGYE WALNPILTSG  600
TGINFRDTKG WTALHWAACF GREKMVAALL AAGASAGAVT DPTPQEPAGK TPGSLAAAND  660
HKGLAGYLSE AALTNHLFSL AMGKSEISKT SGPVEADGGV ESISQRSAHL QGGTEDQLLL  720
KDSLAAVRNA TQAAARIQST FRAYSFWKKH QNADQDKDGF SPEDINGVFV AFRGLCDRAF  780
HKAALSIQKN YRCWKRRKEF VTLRKHVIKI QARVRAHQAR KKYELLLTVG ILEKIILRWC  840
RRRVGLRGFR ADPESINKEE ENDILKVFRK QKVDAALDEA VSSVLSMVDC PEAQQQYRRM  900
LESYRQAKAD LSKVETATSR VSGDWVSREL EDYLNQLGHE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926833.1	0.0	calmodulin-binding transcription activator 4 isoform X2
Swissprot	Q9FYG2	1e-168	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2H3ZYH7	0.0	A0A2H3ZYH7_PHODC; calmodulin-binding transcription activator 4-like isoform X4
STRING	XP_008806417.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-153	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]