PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927035.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 175aa    MW: 20684.3 Da    PI: 7.6031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927035.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.78.6e-44321602128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     ppG+rF Ptdeelv++yL++kv+++kl+  + + e d+y+++P++L +k++a  ee+ +wy F++r +kya+g r+nr++  gyWkat +d+++l
  XP_010927035.1  32 PPGVRFTPTDEELVKYYLTPKVRRQKLPY-DSFVEDDLYQYHPQELAEKYNAsmEEEgNWYIFTQRIRKYANGGRPNRSAGLGYWKATSSDQKIL 125
                     9****************************.778899**********8544432233359************************************ PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++g+++g kk+Lv+++g++p gekt Wvm+ey++
  XP_010927035.1 126 DREGKKIGYKKSLVYHEGKQPYGEKTGWVMQEYKI 160
                     *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-4627165IPR003441NAC domain
PROSITE profilePS5100544.64131175IPR003441NAC domain
PfamPF023653.4E-2432160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MELLAPDQIS EEETKMEAEW QSYSRYWPPP YPPGVRFTPT DEELVKYYLT PKVRRQKLPY  60
DSFVEDDLYQ YHPQELAEKY NASMEEEGNW YIFTQRIRKY ANGGRPNRSA GLGYWKATSS  120
DQKILDREGK KIGYKKSLVY HEGKQPYGEK TGWVMQEYKI DESQKPIKAK SMVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-383216016140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927035.11e-126NAC transcription factor 32-like
SwissprotQ52QH43e-37NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2H3X6X72e-51A0A2H3X6X7_PHODC; NAC transcription factor 29-like
STRINGXP_008779229.13e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-38NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]