PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927053.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 26850.6 Da PI: 10.1909

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927053.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.3e-18	84	138	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Le+ F+ +++++ +++ +LA++l+L rqV vWFqNrRa+ k XP_010927053.1 84 RKKLRLTNEQSMLLEDSFRTHNTLTSSRKNHLAQRLNLRPRQVEVWFQNRRARTK 138 788899***********************************************98 PP
2	HD-ZIP_I/II	107.3	1.2e-34	84	174	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl++eq+ lLE+sF+++++L+++rK++la++L+l+prqv+vWFqnrRARtk+kq+E++ e L +++++l++en++L++e e+r+ l XP_010927053.1 84 RKKLRLTNEQSMLLEDSFRTHNTLTSSRKNHLAQRLNLRPRQVEVWFQNRRARTKLKQTEMERELLNKSCESLMNENRKLKRELMEVRSWL 174 69**********************************************************************************9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-19	73	141	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-18	76	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	80	140	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	82	144	IPR001356	Homeobox domain
CDD	cd00086	2.46E-14	84	141	No hit	No description
Pfam	PF00046	6.0E-15	84	138	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	115	138	IPR017970	Homeobox, conserved site
SMART	SM00340	2.1E-10	140	184	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MVEEEYCNTV LGLSIGGGGH FPSNRSHDRK PPVQFHILFP PQLKEEEIKE ETSTIGEDKK 60 KLSRLNSDNE EDCIIGGSNR GGTRKKLRLT NEQSMLLEDS FRTHNTLTSS RKNHLAQRLN 120 LRPRQVEVWF QNRRARTKLK QTEMERELLN KSCESLMNEN RKLKRELMEV RSWLKPGSPF 180 YVQLSKAATL SMCPSCKKMA SQAIGVNPLS VFPNKTNQGC TGAASKTTLE RSTGSSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	TRKKLRL
2	132	140	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927053.1	1e-176	homeobox-leucine zipper protein HOX18
Swissprot	P46665	3e-44	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A1L5YJM4	1e-174	A0A1L5YJM4_ELAGV; HD-Zip II protein HOX1
STRING	XP_008801538.1	1e-99	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-46	homeobox from Arabidopsis thaliana