PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927107.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 1200aa MW: 135478 Da PI: 7.5321

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927107.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.7	7.4e-08	116	147	60	91
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHelap 91 C+a+++v ++++g+w v++++leH+H+l p XP_010927107.1 116 ERCRAMMEVVRKESGRWAVSRVVLEHTHPLEP 147 57***************************975 PP
2	FAR1	77	3.8e-24	434	517	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA ++GFsvrk ks rn + +r +vCs+eg+r +++ k r+r+etrtgC a++ +k +++gk++vt+++++HnH+la XP_010927107.1 434 EYYVKYAGSIGFSVRKGGCDKSARNI-TRSRVYVCSREGFRLKNEAK-----RPRPETRTGCPAQMAIKITSNGKYRVTEFVSDHNHQLA 517 69******************7777.999********98777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-5	116	147	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.9E-21	434	517	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-29	615	708	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.396	894	930	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-5	905	932	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	0.001	907	927	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1200 aa Download sequence Send to blast
MVLISEITED GAKEGEPKEG DGETEEEDKT EERLQEERDE TKDRPQDPAA SNPAELASPP 60 AEDPKEEAPL PAGKMLYHDY ALRVAYIMRS YLSMRQGGAA AGAPGEAGSG GPGGEERCRA 120 MMEVVRKESG RWAVSRVVLE HTHPLEPPPD PAGTIAGGGL MPRMDMEFDS ISAAKAYYST 180 YSEKMGFKAQ TGSGKRSRGN RILIMQRFLC SKGSYPPYGS AADSAARKRK RGPYKKRVQK 240 NAEEAKKDGE VVEIIQVESS SEKAGAVGDE HGGEAQSGHS KKRTFLAKKD MMPKEPLKEI 300 NLGKDSAAVG KGQDGGKVPL VSNPAQSKLL RDLGIKVSRY THEERRDIVR KYMQKKGNRQ 360 AVDRSIKIPS RQALAERRQR GVGGKFLSKE EMQTLNRQEE PAEEEPELPE EVVANAGGVP 420 IVGMVFENED KAYEYYVKYA GSIGFSVRKG GCDKSARNIT RSRVYVCSRE GFRLKNEAKR 480 PRPETRTGCP AQMAIKITSN GKYRVTEFVS DHNHQLAAPL DIQMLKSQKL LTKVQTRGCE 540 KASLIPAGYK NYLRAKRWKD TQVGDTGAML EYLQKMKGDN PSFYYAIQVD EYDQLTNVFW 600 ADAKSMIDYH YFGDVVCFDT TYKANNYGRP FSLFIGINHH KQSVIFGAAF LYDETMESFK 660 WLFETFRAAM SGKQPKTILT DRCAAISNAI GAVWPDTTQH CCVWQIYQHA VKHLAHVFEG 720 SETFVHDFSQ CIYDFEDEEE FLAAWNSMLE KYNLKDNEWL TKLYEEREKW ALVYSWHIFC 780 ADIKSTLREE TLSTVLKEYL NSEKDISEFF KLYEMLLHER RYAEVQADYH ANQGTPRIPP 840 LRLLWQAANA YTPVVFEMFR REFELFMDCM VYSCGEVGTL SDYGATVKDK SKEHFIRFDS 900 SDGSVMCSCR KFEHVGIQCC HVLKVLDFKN IKELPPQYIL KRWRKDAKAG SIREGHGLML 960 DGDPKTSQLH RYNSLCRILY KIASRAAENQ DTFTLMVNQA DQFLEQVEQI LQTKLLERPS 1020 LANASKGQHN NLIGSGDIHH DNNHESQKMS GKKKNSGSVR RRHQSEQETN RRQKVRKGQP 1080 EEAEVGSRDD EPDVAPNNIP SPSRNPSNQF LAPNHFMQGP YVTPHQFGLG TAQGFRPMTQ 1140 FGQDSSSSAL HQQLFHGSAH LTQGYPTPDM HALQFVGNNS QLDHQGGDQG HCAIPVWDFL

Sequence ? help Back to Top

Protein Sequence Length: 1200 aa Download sequence Send to blast

MVLISEITED GAKEGEPKEG DGETEEEDKT EERLQEERDE TKDRPQDPAA SNPAELASPP  60
AEDPKEEAPL PAGKMLYHDY ALRVAYIMRS YLSMRQGGAA AGAPGEAGSG GPGGEERCRA  120
MMEVVRKESG RWAVSRVVLE HTHPLEPPPD PAGTIAGGGL MPRMDMEFDS ISAAKAYYST  180
YSEKMGFKAQ TGSGKRSRGN RILIMQRFLC SKGSYPPYGS AADSAARKRK RGPYKKRVQK  240
NAEEAKKDGE VVEIIQVESS SEKAGAVGDE HGGEAQSGHS KKRTFLAKKD MMPKEPLKEI  300
NLGKDSAAVG KGQDGGKVPL VSNPAQSKLL RDLGIKVSRY THEERRDIVR KYMQKKGNRQ  360
AVDRSIKIPS RQALAERRQR GVGGKFLSKE EMQTLNRQEE PAEEEPELPE EVVANAGGVP  420
IVGMVFENED KAYEYYVKYA GSIGFSVRKG GCDKSARNIT RSRVYVCSRE GFRLKNEAKR  480
PRPETRTGCP AQMAIKITSN GKYRVTEFVS DHNHQLAAPL DIQMLKSQKL LTKVQTRGCE  540
KASLIPAGYK NYLRAKRWKD TQVGDTGAML EYLQKMKGDN PSFYYAIQVD EYDQLTNVFW  600
ADAKSMIDYH YFGDVVCFDT TYKANNYGRP FSLFIGINHH KQSVIFGAAF LYDETMESFK  660
WLFETFRAAM SGKQPKTILT DRCAAISNAI GAVWPDTTQH CCVWQIYQHA VKHLAHVFEG  720
SETFVHDFSQ CIYDFEDEEE FLAAWNSMLE KYNLKDNEWL TKLYEEREKW ALVYSWHIFC  780
ADIKSTLREE TLSTVLKEYL NSEKDISEFF KLYEMLLHER RYAEVQADYH ANQGTPRIPP  840
LRLLWQAANA YTPVVFEMFR REFELFMDCM VYSCGEVGTL SDYGATVKDK SKEHFIRFDS  900
SDGSVMCSCR KFEHVGIQCC HVLKVLDFKN IKELPPQYIL KRWRKDAKAG SIREGHGLML  960
DGDPKTSQLH RYNSLCRILY KIASRAAENQ DTFTLMVNQA DQFLEQVEQI LQTKLLERPS  1020
LANASKGQHN NLIGSGDIHH DNNHESQKMS GKKKNSGSVR RRHQSEQETN RRQKVRKGQP  1080
EEAEVGSRDD EPDVAPNNIP SPSRNPSNQF LAPNHFMQGP YVTPHQFGLG TAQGFRPMTQ  1140
FGQDSSSSAL HQQLFHGSAH LTQGYPTPDM HALQFVGNNS QLDHQGGDQG HCAIPVWDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	231	ARKRKRG
2	478	482	KRPRP
3	1069	1076	NRRQKVRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927107.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBL	A0A3Q0IH99	0.0	A0A3Q0IH99_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008811123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1-related sequence 5