PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927134.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 437aa MW: 48543 Da PI: 6.2349

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927134.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	224	278	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl XP_010927134.1 224 KPRLRWTLDLHERFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 278 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.067	221	281	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-31	222	279	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.2E-17	222	278	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	224	279	IPR006447	Myb domain, plants
Pfam	PF00249	9.0E-8	226	277	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-21	315	361	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MSSHSIITAE QSNSPEGMRH CCHASASSTT NLFNVLSDCQ KLLNDKLSCT SPSSYVQREL 60 INSSSPQKGL LFRLKKSSPE SDPGSPLSNK CEPQNSAVQS LNSPLLHGGN TTNVHNEDEH 120 SDDLMKDFLN LSGDASDSSF HGENYDNNSI ALGEQMELQM LSEQLGIAIT DNGEIPRLDD 180 IYETPAPSVP LSSNCNQTSQ PLRPAAKFQL HSNSSTSTTA TANKPRLRWT LDLHERFVEA 240 VNKLDGAEKA TPKGVLKLMN VEGLTIYHVK SHLQKYRLAK YLPEAKEDKK ASSSEDQKMP 300 TVSHESDPGK KRNIEVIEAL RMQIEVQKQL HEQLEVQRAL QLRIEEHARY LQRILEEQQK 360 ASNTFVFPTQ MPGTEMQLES PHHLSPEQAE SKVDSICSPS SSNSKHKATD SDTRSKPPED 420 HKRARLEVER EGTSLGS

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MSSHSIITAE QSNSPEGMRH CCHASASSTT NLFNVLSDCQ KLLNDKLSCT SPSSYVQREL  60
INSSSPQKGL LFRLKKSSPE SDPGSPLSNK CEPQNSAVQS LNSPLLHGGN TTNVHNEDEH  120
SDDLMKDFLN LSGDASDSSF HGENYDNNSI ALGEQMELQM LSEQLGIAIT DNGEIPRLDD  180
IYETPAPSVP LSSNCNQTSQ PLRPAAKFQL HSNSSTSTTA TANKPRLRWT LDLHERFVEA  240
VNKLDGAEKA TPKGVLKLMN VEGLTIYHVK SHLQKYRLAK YLPEAKEDKK ASSSEDQKMP  300
TVSHESDPGK KRNIEVIEAL RMQIEVQKQL HEQLEVQRAL QLRIEEHARY LQRILEEQQK  360
ASNTFVFPTQ MPGTEMQLES PHHLSPEQAE SKVDSICSPS SSNSKHKATD SDTRSKPPED  420
HKRARLEVER EGTSLGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029121639.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X2
Swissprot	Q6YXZ4	1e-100	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	M0THW1	1e-158	M0THW1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P15740_001	1e-158	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-87	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]