PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927165.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 547aa MW: 62372.6 Da PI: 9.2436

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927165.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111	1.3e-34	7	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +p G++F+P+ elv+ yL++++ +++l++ ik+++iy+++P+d+ +++ k++yfF++r++k+++g+r+ r ++ gyWka+g+d + ++ XP_010927165.1 7 MPTGYHFRPSPRELVKSYLRRRLLKQPLPC-GLIKDLNIYDFHPRDILSNA-PAGKHLYFFTPRKTKNPNGTRSARGINGGYWKASGRDIIIRDE 99 699*************************.89**********7443.45799*********************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +k Lvfy+g++++g++t+W m+ey++ XP_010927165.1 100 TRREIAHRKFLVFYEGHQRDGRRTSWRMQEYTI 132 *****************************86 PP
2	NAM	124.7	7.8e-39	186	311	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +p G++F+P+ elv+ yL++++ +++l++ ik+++iy+++P+d+ ++ k++yfF++r+kky++g+r+ r t+ gyWka+g+d +++k XP_010927165.1 186 VPTGYHFRPSPRELVKSYLRRRLLKQPLPC-GLIKDLNIYDFHPRDILGNT-RAGKHLYFFTPRKKKYPKGTRPARETNGGYWKASGRDMIIKDK 278 589*************************.89**********7444.45789********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g kk Lvf++g++++g++t+W+mhey++ XP_010927165.1 279 NKKEIGHKKFLVFHEGHQRDGRRTSWLMHEYTI 311 *****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-39	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	38.825	7	157	IPR003441	NAC domain
Pfam	PF02365	5.6E-17	8	132	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-43	183	336	IPR003441	NAC domain
PROSITE profile	PS51005	42.534	186	336	IPR003441	NAC domain
Pfam	PF02365	8.9E-20	187	311	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MASNVPMPTG YHFRPSPREL VKSYLRRRLL KQPLPCGLIK DLNIYDFHPR DILSNAPAGK 60 HLYFFTPRKT KNPNGTRSAR GINGGYWKAS GRDIIIRDET RREIAHRKFL VFYEGHQRDG 120 RRTSWRMQEY TIKEFWFPTN QNNSELGALA LCEIFSKPTL DQSRDGEVQV DEEEEEDEGM 180 ASNVPVPTGY HFRPSPRELV KSYLRRRLLK QPLPCGLIKD LNIYDFHPRD ILGNTRAGKH 240 LYFFTPRKKK YPKGTRPARE TNGGYWKASG RDMIIKDKNK KEIGHKKFLV FHEGHQRDGR 300 RTSWLMHEYT IKEFWFPTNQ NNDKLGALAL CEIYLKPTSN RSRGGELQAV EEEEGSAYSS 360 DDSDIEDNII ADRLIRPHPA QCNHDNDRRR APIAFTNECP LGSPSACGSS TARPVPSTPL 420 LGYNNMQGHN MVLIPQYILG PSGPLQPEAS YLCNRTAMPG SNPEQPDFLV HSFYCPYAPS 480 SSSGNQMMPP PQHGELPSPE FGVATASSSQ YEVSPQRMPP SQLYLEASQL MPSAFETTLW 540 PPPRPLR

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MASNVPMPTG YHFRPSPREL VKSYLRRRLL KQPLPCGLIK DLNIYDFHPR DILSNAPAGK  60
HLYFFTPRKT KNPNGTRSAR GINGGYWKAS GRDIIIRDET RREIAHRKFL VFYEGHQRDG  120
RRTSWRMQEY TIKEFWFPTN QNNSELGALA LCEIFSKPTL DQSRDGEVQV DEEEEEDEGM  180
ASNVPVPTGY HFRPSPRELV KSYLRRRLLK QPLPCGLIKD LNIYDFHPRD ILGNTRAGKH  240
LYFFTPRKKK YPKGTRPARE TNGGYWKASG RDMIIKDKNK KEIGHKKFLV FHEGHQRDGR  300
RTSWLMHEYT IKEFWFPTNQ NNDKLGALAL CEIYLKPTSN RSRGGELQAV EEEEGSAYSS  360
DDSDIEDNII ADRLIRPHPA QCNHDNDRRR APIAFTNECP LGSPSACGSS TARPVPSTPL  420
LGYNNMQGHN MVLIPQYILG PSGPLQPEAS YLCNRTAMPG SNPEQPDFLV HSFYCPYAPS  480
SSSGNQMMPP PQHGELPSPE FGVATASSSQ YEVSPQRMPP SQLYLEASQL MPSAFETTLW  540
PPPRPLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-27	3	339	16	173	NAC domain-containing protein 19
3swm_B	2e-27	3	339	16	173	NAC domain-containing protein 19
3swm_C	2e-27	3	339	16	173	NAC domain-containing protein 19
3swm_D	2e-27	3	339	16	173	NAC domain-containing protein 19
3swp_A	2e-27	3	339	16	173	NAC domain-containing protein 19
3swp_B	2e-27	3	339	16	173	NAC domain-containing protein 19
3swp_C	2e-27	3	339	16	173	NAC domain-containing protein 19
3swp_D	2e-27	3	339	16	173	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927165.1	0.0	uncharacterized protein LOC105049263
TrEMBL	A0A3Q0HMG7	0.0	A0A3Q0HMG7_PHODC; NAC domain-containing protein 7-like isoform X1
STRING	XP_008812618.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37531	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-30	NAC domain containing protein 25